Query= MSMg01no513_n14.b1 MSMg01no513_n14.b1 CHROMAT_FILE:
MSMg01no513_n14.b1 PHD_FILE: MSMg01no513_n14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:30 2005
(638 letters)
>mm_chr1_40000309_40001346
Length = 1038
Score = 1210 bits (626), Expect = 0.0
Identities = 632/634 (99%)
Strand = Plus / Plus
Query: 5 gaattcacatggtcaggactagggactaaaagtaagtgcttcagcctggcaagaagactg 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacatggccaggactagggactaaaagtaagtgcttcagcctggcaagaagactg 264
Query: 65 tcctgtcttcttcactgtttgtctcccaccctcccattttccatttttaggactctgcag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcctgtcttcttcactgtttgtctcccaccctcccattttccatttttaggactctgcag 324
Query: 125 gagggaaagtctgcacagctagtgttgggtgggcctaggacactattggaggagctgaag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagggaaagtctgcacagctagtgttgggtgggcctaggacactattggaggagctgaag 384
Query: 185 ggcatcatgtctcccagacctggcttctggtccctagtgtattcttcatccttacagtca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggcatcatgtctcccagacctggcttctggtccctagtgtattcttcatccttacagtca 444
Query: 245 gtagctgagtttggcttcttctgggatcggggtccgtgttgcacaggacaaaatgtgtat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtagctgagtttggcttcttctgggatcggggtccgtgttgcacaggacaaaatgtgtat 504
Query: 305 acaggcatttgtgtttgcattaagaactgcctgttgcaggaatgctggccatgtagctgt 364
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acgggcatttgtgtttgcattaagaactgcctgttgcaggaatgctggccatgtagctgt 564
Query: 365 gcagcaggaaggcttagccatatctgagttctgagtttggtaaaagggataatggaagtc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcagcaggaaggcttagccatatctgagttctgagtttggtaaaagggataatggaagtc 624
Query: 425 ggctgcatttcatcctttccttgtttcccaccttcgtggccagtaaacacggtttcttcc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggctgcatttcatcctttccttgtttcccaccttcgtggccagtaaacacggtttcttcc 684
Query: 485 acatcgcccacttcccttaaagtacttttaaggatgtttttattaataagctgttagtta 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acatcgcccacttcccttaaagtacttttaaggatgtttttattaataagctgttagtta 744
Query: 545 ctactgtgagggatactctctgaggaaggagaactatctgagagaacttgacagaacctt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctactgtgagggatactctctgaggaaggagaactatctgagagaacttgacagaacctt 804
Query: 605 gtgcattcatacatccacctttgctttctcattg 638
||||||||||||||||||||||||||||||||||
Sbjct: 805 gtgcattcatacatccacctttgctttctcattg 838
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space: 645584
Effective search space used: 645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_n14.g1 MSMg01no513_n14.g1 CHROMAT_FILE:
MSMg01no513_n14.g1 PHD_FILE: MSMg01no513_n14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:30 2005
(522 letters)
>mm_chr1_40166799_40167720
Length = 922
Score = 924 bits (478), Expect = 0.0
Identities = 508/524 (96%), Gaps = 10/524 (1%)
Strand = Plus / Minus
Query: 9 cgtggttacctgcgtaagactgggctggcttccattacataatgcacggggagggtcatc 68
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 668 cgtggttacctgcataagactgggctggcttccattacataatgcacggagagggtcatc 609
Query: 69 tgaggccctctcctcaccgaagtgaggcactcactgtactcaggtcctgggtaaccaggc 128
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 608 tgaggcccactcctcaccgaagtgaggcactcactgtaggcaggtcctgggtaaccaggc 549
Query: 129 attagtaactcacagcccactcctgcaagcacccgtgattaaacgtggtgtgtcgtgcac 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 attagtaactcacagcccactcctgcaagcacccgtgattaaacgtggtgtgtcgtgcac 489
Query: 189 acaaaaagaccccagagtcggaagaagataaaagactgtgatggggaatgaaaaatatcc 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 acaaaaagaccccagagtcggaagaagataaaagactgtgatggggaatgaaaaatatcc 429
Query: 249 taaatccagtgaataagcatataaaatggtctaataaaccaatgagatgaaaatgaaaag 308
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 428 taaatccagtgaataagcatataaaatggtctaataaaccaatgagatgaaaatgagaag 369
Query: 309 actgaagagcgctttcggtacccgcttaacagcaaactgatctcctgtctagtaacaaat 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 actgaagagcgctttcggtacccgcttaacagcaaactgatctcctgtctagtaacaaat 309
Query: 369 ctacaggatggtactggttaggccagtgtttacaactaaagtaaattaagtacagattga 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ctacaggatggtactggttaggccagtgtttacaactaaagtaaattaagtacagattga 249
Query: 429 agtaacctaagtctctgtagctagtaagagaaaaaaaaaa----------tcaaaggctc 478
|||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 248 agtaacctaagtctctgtagctagtaagagaaaaaaaaaaaaaaaaaccatcaaaggctc 189
Query: 479 ttagaaatcccataaactagaagtttctagaaaccacgcctgcc 522
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ttagaaatcccataaactagaagtttctagaaaccacgcctgcc 145
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
