Query= MSMg01no513_p09.b1 MSMg01no513_p09.b1 CHROMAT_FILE:
MSMg01no513_p09.b1 PHD_FILE: MSMg01no513_p09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:40 2005
(658 letters)
>mm_chr1_178042853_178043910
Length = 1058
Score = 1218 bits (630), Expect = 0.0
Identities = 648/654 (99%)
Strand = Plus / Plus
Query: 5 gaattcattctgactcttgtcttctggcttgaaatacacagaacataactgctatgcaac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattctgactcttgtcttctggcttgaaatacacagaacataactgctatgcaac 264
Query: 65 agcacacttcttgctctggctgaactgtagctttgtacccattgatcagtctttcccata 124
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 265 agcacacttcttgctctggctgaactgtagcttcgtacccattgatcagtctttcccata 324
Query: 125 ttctgttcccattggtcagtctttcccatgttctgttcccattggtcagtctttcccatg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttctgttcccattggtcagtctttcccatgttctgttcccattggtcagtctttcccatg 384
Query: 185 ctctgttctcactggtcagtctttcccatgctctgttctcattggccagtctttcccaca 244
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 385 ctctgttctcactggtcagtctttcccatgctctgttctcattggtcagtctttcccaca 444
Query: 245 ctctgtttctcgtgctcatcagtctctggtaatcacttcgctgttcttggcgcctataaa 304
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctctgtttcttgtgctcatcagtctctggtaatcacttcgctgttcttggcgcctataaa 504
Query: 305 gtcaactccagctcttttatatccacatgagtgaggagtttctcttgctgcatttaatga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtcaactccagctcttttatatccacatgagtgaggagtttctcttgctgcatttaatga 564
Query: 365 aatgatctccagaagcatctaacatattgcaagtggcaggaagttattcttttttgtggc 424
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aatgatctccagaaacatctaacatattgcaagtggcaggaagttattcttttttgtggc 624
Query: 425 tacatactacgccatagcgtataggtaccacatgttcattatccatgcatccactgtaca 484
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tacatactacaccatagcgtataggtaccacatgttcattatccatgcatccactgtaca 684
Query: 485 catataggttgtttccacgtgatggctactgttgtgtgttaaaataattaagaagtgaat 544
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 685 catataggttgtttccacgtgatggctactgttgtgtattaaaataattaagaagtgaat 744
Query: 545 aacaagtaagaggttaagataattaagaagtggagtatgtctcttgactaggttcatttc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aacaagtaagaggttaagataattaagaagtggagtatgtctcttgactaggttcatttc 804
Query: 605 cttagtatgcactaatttttaatgcaaagtgggatcgctgtatcatgagttcag 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cttagtatgcactaatttttaatgcaaagtgggatcgctgtatcatgagttcag 858
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_p09.g1 MSMg01no513_p09.g1 CHROMAT_FILE:
MSMg01no513_p09.g1 PHD_FILE: MSMg01no513_p09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:40 2005
(683 letters)
>mm_chr1_178190681_178191763
Length = 1083
Score = 1232 bits (637), Expect = 0.0
Identities = 672/685 (98%), Gaps = 4/685 (0%)
Strand = Plus / Minus
Query: 1 tctgaccctggacatgcctgcacgctttcagtttggaaccttcccttactttctggtgta 60
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927 tctgacgctggacatacctgcacgctttcagtttggaaccttcccttactttctggtgta 868
Query: 61 ccagagttctccaagcttgttttgtattttccctactccttcttactatgatcttagaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 ccagagttctccaagcttgttttgtattttccctactccttcttactatgatcttagaga 808
Query: 121 cttaaaaacaatattaagtattctttggtttaactacatctaatctcacaaggctccaga 180
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 807 cttaaaaacaatattaagtattcttttgtttaactacgtctaatctcacaaggctccaga 748
Query: 181 gagcaaagtcttcagttatgtaacatttccaataaaagctcaatggacatgttctgatga 240
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 gaacaaagtctttagttatgtaacatttccaataaaagctcaatggacatgttctgatga 688
Query: 241 ggctgaagcatctttagaactgattctagtctttaatgtatatgtgcaagctgatgtaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ggctgaagcatctttagaactgattctagtctttaatgtatatgtgcaagctgatgtaag 628
Query: 301 cctgggtagagtataatatttagaaagggtactcttaggtgacaataggacagaatgcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 cctgggtagagtataatatttagaaagggtactcttaggtgacaataggacagaatgcag 568
Query: 361 gcacacgcacttgaatcacaagagaggatataacactagctgctttctagttttaactct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gcacacgcacttgaatcacaagagaggatataacactagctgctttctagttttaactct 508
Query: 421 gtcatg--tttttttctttcttgtcattgataagtgcatagaacatgtagttgagagtaa 478
|||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 507 gtcatgtttttttttctttct--tcattgataagtgcatagaacatgtagttgagggtaa 450
Query: 479 acctgtaaaatcctaagccaagctccatagcttcaaagtagctgttctaactgtgtagac 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 acctgtaaaatcctaagccaagctccatagcttcaaagtagctgttctaactgtgtagaa 390
Query: 539 gttcatcgagctgcatcgaggtttggatcaggtgtttgggcgcgtgctttgatacagctg 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gttcatcgagctgcatcgaggtttggatcaggtgtttgggcgcgtgctttgatacagctg 330
Query: 599 catgatgtttttcatttgtgaggtcattacaataaaataaattttatgttttaaaaaact 658
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 329 catgatgtttttcatttgtgaggtcattacaataaaataaattttatgtttcaaaaaact 270
Query: 659 tcagatacatcttcaagtatagccc 683
|||||||||||||||||||||||||
Sbjct: 269 tcagatacatcttcaagtatagccc 245
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space: 722129
Effective search space used: 722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
