BAC Information

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BAC

Clone NameMSMg01-514B23
Chromosome1 (Build37)
Map Location 136,489,875 - 136,672,278
singlet/doubletdoublet
Overlap geneJarid1b, LOC100042418, Syt2, Ppp1r12b
Upstream geneSnrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik
Downstream geneUbe2t, Lgr6, Ptprv, LOC100042432, Ptpn7, Arl8a, Gpr37l1, LOC100043064, Elf3, Rnpep, Timm17a, Lmod1, Tmem58, Ipo9, Nav1, EG215714, LOC623327, Csrp1, Phlda3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-514B23.T7 (MSMg01no514_b23.b1)MSMg01-514B23.TJ (MSMg01no514_b23.g1)
ACCAG586682AG586683
length770746
length of high quality
(start - end)		619 (37 - 655)546 (74 - 619)
definitionCHROMAT_FILE: MSMg01no514_b23.b1 PHD_FILE: MSMg01no514_b23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:53 2005CHROMAT_FILE: MSMg01no514_b23.g1 PHD_FILE: MSMg01no514_b23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,489,875 - 136,490,489)(136,671,733 - 136,672,278)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTG
GTCCTTCCGTTTTCTTTTTAGTGTCTTCAGAAGCCTAATCTGACCTCCGA
CACAAAGGACAAGGAGTACAAACCCCATGATATTCCCCAGAGGCAGTCTG
TGCAGCCCGCAGAAACCTGTCCTCCGGCCCGCCGAGCAAAGCGCATGAGA
GCAGAGGTGAGTATTTTATTGGATCCTGAATGTAAGTGCTGGAAGCATGG
TGGCTCATGGCAGTGAGCTGCTGTGGCTAGGACTCTTCACATGGTGGACC
AGGGAGTAGAGGGCAAGATTATAATGATGAGACCAGGCCTAGAGCTCATA
TGGTTCACCCCTGATGTGGAGGCCCCAACTACTAAAGGCTAATTTATACT
AATACTAATTTATAATAATAAATTTTTATTATTATGTATTTTGCTTGAAT
GTCTGTGTGCAAGGAAAATGTACCAGTGCTTAGAATATACTGGTATATAG
TAATTCTAAACATAATAATCCCTCCCTTTATTTGCTTAAGAGTGGTCCTT
AAAAAGCCTGGGCTTTACAAAAACTTCTAGTGTTCTACCAAGTGGTTTTT
TGTTTGTTTGTTCATTTTGTTTTTTGACTACACTGGCTCCCTAGGCAACT
GACAATAGTTTTGAGCCTTGGTACTCTCATAAGGGAATATGCCACACTGC
TCTGTGGTTATGGTGGTGTCTGTAAAGGGGGAAGAATGGAAGAGCGCCTT
CTGGGTTGCCTGAAAAATGT

CATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCGGGGACTAAGTATTTCAAAAGCAGA
ACTGGGGTTAAAAGGGGGGGGGTCTTTATAAGAATATAAAGTGAAAACCA
GAGATGGCTAATTAATCTGATAATATGGTATAACCCCAATGAAAAATAAA
ATTATAGGCTCCTGGAGTCCCAGGCACAAGGTATGTCATCCGGGAGGGGT
TGAGTACCATCTTAGCATCTTACTGTAGCCCTCTGACAAGGGATGCACAA
GGGAGCAAAGAGGGGACAGGAGCCATACATGGCTCTTACTGTACTTTCCG
AGACTTAAAGCTAGCACATACTAGATGTAAAGCTATTTCGTGGGGTGGAA
AAAAAGGTCTCTGATTTAAAGAAAAGCCCATGACAAAATTATAACTCTGC
CATCAGGTGGGAGGCAGGATGAATGCGTTTATGGCCTCTCTCCCTCTGCA
TTACTAAACAAGACAGTGTGTCTTGTCAGAGACTAGTTTGGTTCTGAATA
GCTTCCAGATGGGCCGCAGTTAGTAGTAAATGCAGCCCTTAAGCTGCTCC
CAGAAGCTGTACCCCTCTCAGAACATAAAGGAGCAGCCCCGAGAGAAGCA
CTGCAGCCCACTCCTCAGCAGGGCTACTACTACCACCAGGAGCTGCTGGA
GTTCTTCCCACCAGCCTCGCAGTGTCACAGCAGCCTAACGAACTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no514_b23.b1 MSMg01no514_b23.b1 CHROMAT_FILE:
MSMg01no514_b23.b1 PHD_FILE: MSMg01no514_b23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:53 2005
         (619 letters)



>mm_chr1_136489671_136490689
          Length = 1019

 Score = 1166 bits (603), Expect = 0.0
 Identities = 612/615 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattggtccttccgttttctttttagtgtcttcagaagcctaatctgacctccga 64
           ||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 205 gaattcattggtccaaccgttttctttttagtgtcttcagaagcctaacctgacctccga 264

                                                                       
Query: 65  cacaaaggacaaggagtacaaaccccatgatattccccagaggcagtctgtgcagcccgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cacaaaggacaaggagtacaaaccccatgatattccccagaggcagtctgtgcagcccgc 324

                                                                       
Query: 125 agaaacctgtcctccggcccgccgagcaaagcgcatgagagcagaggtgagtattttatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agaaacctgtcctccggcccgccgagcaaagcgcatgagagcagaggtgagtattttatt 384

                                                                       
Query: 185 ggatcctgaatgtaagtgctggaagcatggtggctcatggcagtgagctgctgtggctag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggatcctgaatgtaagtgctggaagcatggtggctcatggcagtgagctgctgtggctag 444

                                                                       
Query: 245 gactcttcacatggtggaccagggagtagagggcaagattataatgatgagaccaggcct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gactcttcacatggtggaccagggagtagagggcaagattataatgatgagaccaggcct 504

                                                                       
Query: 305 agagctcatatggttcacccctgatgtggaggccccaactactaaaggctaatttatact 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agagctcatatggttcacccctgatgtggaggccccaactactaaaggctaatttatact 564

                                                                       
Query: 365 aatactaatttataataataaatttttattattatgtattttgcttgaatgtctgtgtgc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aatactaatttataataataaatttttattattatgtattttgcttgaatgtctgtgtgc 624

                                                                       
Query: 425 aaggaaaatgtaccagtgcttagaatatactggtatatagtaattctaaacataataatc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaggaaaatgtaccagtgcttagaatatactggtatatagtaattctaaacataataatc 684

                                                                       
Query: 485 cctccctttatttgcttaagagtggtccttaaaaagcctgggctttacaaaaacttctag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cctccctttatttgcttaagagtggtccttaaaaagcctgggctttacaaaaacttctag 744

                                                                       
Query: 545 tgttctaccaagtggttttttgtttgtttgttcattttgttttttgactacactggctcc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgttctaccaagtggttttttgtttgtttgttcattttgttttttgactacactggctcc 804

                          
Query: 605 ctaggcaactgacaa 619
           |||||||||||||||
Sbjct: 805 ctaggcaactgacaa 819


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no514_b23.g1 MSMg01no514_b23.g1 CHROMAT_FILE:
MSMg01no514_b23.g1 PHD_FILE: MSMg01no514_b23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:54 2005
         (546 letters)



>mm_chr1_136671533_136672478
          Length = 946

 Score = 1056 bits (546), Expect = 0.0
 Identities = 546/546 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcggggactaagtatttcaaaagcagaactggggttaaaagggggggggtctttataaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tcggggactaagtatttcaaaagcagaactggggttaaaagggggggggtctttataaga 687

                                                                       
Query: 61  atataaagtgaaaaccagagatggctaattaatctgataatatggtataaccccaatgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 atataaagtgaaaaccagagatggctaattaatctgataatatggtataaccccaatgaa 627

                                                                       
Query: 121 aaataaaattataggctcctggagtcccaggcacaaggtatgtcatccgggaggggttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 aaataaaattataggctcctggagtcccaggcacaaggtatgtcatccgggaggggttga 567

                                                                       
Query: 181 gtaccatcttagcatcttactgtagccctctgacaagggatgcacaagggagcaaagagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gtaccatcttagcatcttactgtagccctctgacaagggatgcacaagggagcaaagagg 507

                                                                       
Query: 241 ggacaggagccatacatggctcttactgtactttccgagacttaaagctagcacatacta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ggacaggagccatacatggctcttactgtactttccgagacttaaagctagcacatacta 447

                                                                       
Query: 301 gatgtaaagctatttcgtggggtggaaaaaaaggtctctgatttaaagaaaagcccatga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gatgtaaagctatttcgtggggtggaaaaaaaggtctctgatttaaagaaaagcccatga 387

                                                                       
Query: 361 caaaattataactctgccatcaggtgggaggcaggatgaatgcgtttatggcctctctcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 caaaattataactctgccatcaggtgggaggcaggatgaatgcgtttatggcctctctcc 327

                                                                       
Query: 421 ctctgcattactaaacaagacagtgtgtcttgtcagagactagtttggttctgaatagct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ctctgcattactaaacaagacagtgtgtcttgtcagagactagtttggttctgaatagct 267

                                                                       
Query: 481 tccagatgggccgcagttagtagtaaatgcagcccttaagctgctcccagaagctgtacc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tccagatgggccgcagttagtagtaaatgcagcccttaagctgctcccagaagctgtacc 207

                 
Query: 541 cctctc 546
           ||||||
Sbjct: 206 cctctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space:   501696
Effective search space used:   501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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