ACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGTGTCTCTCTAATGCAGTATGGAACCTATCTGAGGTCCACACG
GCGAGAACTTTCTGATCTTGTGCTTCTGATCAGGTTTCCTACCCTACCTA
GTCCCATGCAACTAAAGAGCCCGGCCCTGTGCTCCAAAGGGAAGAAAACA
AGGCCACTCACCTCCTCATGCCTGCTTCTTGCTCTGAAACCTTGTTCCTA
AGACTCTACTCCTCTGGAGCCATCTTGGGCTCTGCCTTCTGGAGGAGAGC
TGCCTGCTGTGGTGCCTAATATACTATGCAGGTCACCCAGCCCCAGGGGA
ACCTTGGGAATTTGCTTCCTCTAGCTGTCCTGAGGTAGGTTAAGTTAACT
AGCATCAATGAGGTTGATGTTGCCATTCACAGTCAGCATCTTGCATATGT
GCCTATGAGATGCCCGTGTCTCTTCGCTTAGACATTTCTTTCCAATTTTT
TTGTGATGATCAAATCCACAGAATGTCCCCAGGCTAGTCAGGTGCATTTG
AACTAAATCTGTGTAACGAGAGGGAATGAAGGTTTAAAAGGGCATTTCAG
GACTGGTAAAATGCCTTCTTGCAAGTGTGAAGACCTGGGTTTGGAGCCCC
ACAACTCGCATGCAAAGCTAACTCTAGGGGATGGGGTGAAGACAGTGAGT
TCTTGACACTCACTGACA

TCCATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGATTCTCTAATGTATGTATATGGAT
GGTGTATGAGTCTGTACAAGTGCAAGTTTGCACACGTGTGGCAACCAAAG
ACCAAAGTCTATGTATTCCTCAATGGGTCTCTATTTTGTATTCTGGGAGA
GGGTATATCAATGAACCTGGAGGCTCATCAATTGGCTAGACTGGCTGTTT
AGTAGGCCTGTTTTCTCCTCCCCAGATGAGCTACCAGATGCATGCAGCCA
TACCCATTTTTTGTTTTGTTTTGGTTTTTTTTGTTTTTGTTTTTTCGAGA
CAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTCGAACTCAGAAATCCACCT
GCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCGCCACCATGCCCAG
CTCATACCCAGCTTTAAATGGGAGCTAAAGTCTTTATACTTCAGCTTAGG
TTCCCCCATGAACTCCAATCCTCATACCTGCTCAGTAGGCACTTCACCGA
CAGCCATCTCTTCAGACCCCTTGGATGGATAACTCTTTTCTGAGTTTTAC
TGTTCCCCAAATTCCATATTCACTCTGAAACTGCCCATTATATTAAGATG
AGGCCATAATGGATTAGAGTGGGCATTAACCTAAATCCAATATGCCTAGC
ATTGTTTTCCTTANGCTTA

Query= MSMg01no514_f03.b1 MSMg01no514_f03.b1 CHROMAT_FILE:
MSMg01no514_f03.b1 PHD_FILE: MSMg01no514_f03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:10 2005
         (577 letters)



>mm_chr1_193443579_193444554
          Length = 976

 Score = 1046 bits (541), Expect = 0.0
 Identities = 565/573 (98%), Gaps = 1/573 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtgtctctctaatgcagtatggaacctatctgaggtccacacggcgagaactt 64
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtgtctct-tagtgcagtatggaacctatctgaggtccacacggcgagaactt 263

                                                                       
Query: 65  tctgatcttgtgcttctgatcaggtttcctaccctacctagtcccatgcaactaaagagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tctgatcttgtgcttctgatcaggtttcctaccctacctagtcccatgcaactaaagagc 323

                                                                       
Query: 125 ccggccctgtgctccaaagggaagaaaacaaggccactcacctcctcatgcctgcttctt 184
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctggccctgtgctccaaagggaagaaaacaaggccactcacctcctcatgcctgcttctt 383

                                                                       
Query: 185 gctctgaaaccttgttcctaagactctactcctctggagccatcttgggctctgccttct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gctctgaaaccttgttcctaagactctactcctctggagccatcttgggctctgccttct 443

                                                                       
Query: 245 ggaggagagctgcctgctgtggtgcctaatatactatgcaggtcacccagccccagggga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggaggagagctgcctgctgtggtgcctaatatactatgcaggtcacccagccccagggga 503

                                                                       
Query: 305 accttgggaatttgcttcctctagctgtcctgaggtaggttaagttaactagcatcaatg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 accttgggaatttgcttcctctagctgtcctgaggtaggttaagttaactagcatcaatg 563

                                                                       
Query: 365 aggttgatgttgccattcacagtcagcatcttgcatatgtgcctatgagatgcccgtgtc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aggttgatgttgccattcacagtcagcatcttgcatatgtgcctatgagatgcccgtgtc 623

                                                                       
Query: 425 tcttcgcttagacatttctttccaatttttttgtgatgatcaaatccacagaatgtcccc 484
           |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 624 tctttgcttagacatttctttccaatttttttgtggtgatcaaatccacagaatgtcccc 683

                                                                       
Query: 485 aggctagtcaggtgcatttgaactaaatctgtgtaacgagagggaatgaaggtttaaaag 544
           ||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||
Sbjct: 684 aggctagtcaggtgcatttgaactaaatctgtgtaactagatggagtgaaggtttaaaag 743

                                            
Query: 545 ggcatttcaggactggtaaaatgccttcttgca 577
           |||||||||||||||||||||||||||||||||
Sbjct: 744 ggcatttcaggactggtaaaatgccttcttgca 776


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 976
Length adjustment: 10
Effective length of query: 567
Effective length of database: 966
Effective search space:   547722
Effective search space used:   547722
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)