Query= MSMg01no514_g07.b1 MSMg01no514_g07.b1 CHROMAT_FILE:
MSMg01no514_g07.b1 PHD_FILE: MSMg01no514_g07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:16 2005
(647 letters)
>mm_chr1_192736704_192737754
Length = 1051
Score = 1096 bits (567), Expect = 0.0
Identities = 627/655 (95%), Gaps = 16/655 (2%)
Strand = Plus / Plus
Query: 8 ttccactctctttcgcagaaagaaaaacgttgttctaataatgtctccaccctgtatgtt 67
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ttccactctctttggcagaaagaaaaacgttgttctaataatgtctccaccctgtatgtt 257
Query: 68 tgatc-tctgactattaacctcttctgagcctttaggcttttcttattatttctcttatg 126
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tgatcttc-gactattaacctcttctgagcctttaggcttttcttattatttctcttatg 316
Query: 127 tgtatgagtcttttgcctgcctgtatgtatgttcaccatatgtatacctggtacccacaa 186
|||||| |||||||||||||||| ||||||||| |||| |||||||||||||||||||||
Sbjct: 317 tgtatgggtcttttgcctgcctgcatgtatgttgaccacatgtatacctggtacccacaa 376
Query: 187 aaacaaaagatcaccacagatccccaggatggtt----------ctgggatccaaatcca 236
||| |||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 377 aaaaaaaaaatcaccacagatccccaggatggttcatgtgggtcctgggatccaaatcca 436
Query: 237 ggtaggtcccctgcaagagcaccaagtgttcttaactgctgttatctctctagctcaagc 296
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 437 ggtaggtcccctgcaagagcaccaggtgttcttaactgctgttatctctctagctcaagc 496
Query: 297 ctatacagtcaaaaaactagctctcacttattcattaaccctgaattcactacctgctat 356
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 497 ctatacagtcaaaaaactagctatcacttattcattaaccctgaattcactacctgctat 556
Query: 357 gtgtcagactttatactaatgaggcattggagttataaagactgttcctctctttctcta 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 557 gtgtcagactttatactaatgaggcattggagttataaagactgttcctctctttcttta 616
Query: 417 cataccatcactagtatgcaacgaagtatataaatatgaccagtacataccatggcatgc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 cataccatcactagtatgcaacgaagtatataaatatgaccagtacataccatggcatgc 676
Query: 477 tatagaaaaccgataatccagaatggcttctgatcaaaggaaactgcctgatacaggaaa 536
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 677 tatagaaaaccgataatccagaatggcctctgatcaaaggaaactgcctgatacaggaaa 736
Query: 537 gacagatggcagatagccaggaagaaggaccaatggtattctgttgcatttcaccct--- 593
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 gacagatggcagatagccaggaagaaggaccaatggtattctgttgcatttcacccttcc 796
Query: 594 -cactgtccactgagtgggtgtgacctcatccattcagtctttctcctgggcagt 647
||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 797 tcactgtccactgagtgggtatgacctcatccattcagtctttctcctgggcagt 851
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1051
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1041
Effective search space: 663117
Effective search space used: 663117
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_g07.g1 MSMg01no514_g07.g1 CHROMAT_FILE:
MSMg01no514_g07.g1 PHD_FILE: MSMg01no514_g07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:16 2005
(589 letters)
>mm_chr1_192886748_192887739
Length = 992
Score = 1122 bits (580), Expect = 0.0
Identities = 588/592 (99%), Gaps = 3/592 (0%)
Strand = Plus / Minus
Query: 1 ctcataccaaccagcaaagttgcgctggcccacaggagagcgactttgtctttactgcgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 ctcataccaaccagcaaagttgcgctggcccacaggagagcgactttgtctttactgcgc 733
Query: 61 acttaactaccaaaagaaatgttttgtaaaacacaagatttgaaagcttgctatgaaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 acttaactaccaaaagaaatgttttgtaaaacacaagatttgaaagcttgctatgaaagc 673
Query: 121 aaaatgtgatgccttgtttatacgtatagcgctgtacatgttcaagaatatgggtacact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 aaaatgtgatgccttgtttatacgtatagcgctgtacatgttcaagaatatgggtacact 613
Query: 181 taataccgcctgcttcttaagattacatacgtgttcgccctgtatgttcctgacagga-- 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 taataccgcctgcttcttaagattacatacgtgttcgccctgtatgttcctgacaggaag 553
Query: 239 -agcacccaggcggcactagcatctagttgccttccctggcatttcccaagccagtcttg 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cagcacccaggcggcactagcatctagttgccttccctggcatttcccaagccagtcttg 493
Query: 298 ggcatcgttccatctgcgaaggcctgacatgggccccgagtcagagccaggatgcgctgg 357
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 492 ggcatcgttccatctgcgaaggcctgacatgggccccgagccagagccaggatgcgctgg 433
Query: 358 gtgaggaccgggaaagaggggtccgtacccactgtgcgtcccgcagcgcgagctcgcgga 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gtgaggaccgggaaagaggggtccgtacccactgtgcgtcccgcagcgcgagctcgcgga 373
Query: 418 cgtcctccggcagcacggccccgagctcctgcacgaagcgaccgcacatctccatcactt 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 cgtcctccggcagcacggccccgagctcctgcacgaagcgaccgcacatctccatcactt 313
Query: 478 ccatcaccgccctcttcaaggtgcagcgcactcggaagtcctctaggggagagtctgctg 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ccatcaccgccctcttcaaggtgcagcgcactcggaagtcctctaggggagagtctgctg 253
Query: 538 ccgtggcctgagggtctgaggcggcctgggcatcgtggtcctgcggggcgga 589
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ccgtggcctgagggtctgaggcggcctgggcatcgtggtcctgcggggcgga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 992
Length adjustment: 10
Effective length of query: 579
Effective length of database: 982
Effective search space: 568578
Effective search space used: 568578
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
