Query= MSMg01no514_k01.b1 MSMg01no514_k01.b1 CHROMAT_FILE:
MSMg01no514_k01.b1 PHD_FILE: MSMg01no514_k01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:35 2005
(525 letters)
>mm_chr1_186146839_186147769
Length = 931
Score = 915 bits (473), Expect = 0.0
Identities = 513/529 (96%), Gaps = 6/529 (1%)
Strand = Plus / Plus
Query: 1 atggagacaagagttaactgtggtgaacacaccatttattgactggaagatggcaatcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atggagacaagagttaactgtggtgaacacaccatttattgactggaagatggcaatcat 260
Query: 61 aactcctcatagactttggaagacccatggaggtacagctgttccaatccaaccctacca 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactcctcatggactttggaagacccatggaggtacagctgttccaatccaaccctacca 320
Query: 121 actcattttctaagttataaagccaggctcacaccaacccataatgcatgcacataatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actcattttctaagttataaagccaggctcacaccaacccataatgcatgcacataatct 380
Query: 181 cagaccatcattgtctatctaatccctttaaagcagagactataattatgaccagataac 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagaccatcattgtttatctaatccctttaaagcagagactataattatgaccagataac 440
Query: 241 caagttgcttcctggcacctatcctgacccataatctcctggacctcacctactgctttt 300
||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
Sbjct: 441 caagttgcttcctggcacctatcctgacccacaatctcccggacctcacctactgcttct 500
Query: 301 actctgttccattgattcattacttgactcttccatctttgatatggatctagccccagt 360
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 501 actctgttccattgattcattacctgactcttccgtctttgatatggatctagccccagt 560
Query: 361 tgttttgaagactatgacatttttctcaggacccatgaacttctgcttctccttcagtgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgttttgaagactatgacatttttctcaggacccatgaacttctgcttctccttcagtgt 620
Query: 421 ttcatccctgattggccccacagtggagtaccccactcttacccagatccagcccag--- 477
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 621 ttcatccctgcttggccccacagtggagtactccactcttacccagatccagcccagccc 680
Query: 478 --tgc-tatcaagcacatctgagacaccaacagctcacacatacctccc 523
| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatacctatcaagcacatctgagacaccaacagctcacacatacctccc 729
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 931
Length adjustment: 10
Effective length of query: 515
Effective length of database: 921
Effective search space: 474315
Effective search space used: 474315
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_k01.g1 MSMg01no514_k01.g1 CHROMAT_FILE:
MSMg01no514_k01.g1 PHD_FILE: MSMg01no514_k01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:36 2005
(559 letters)
>mm_chr1_186309807_186310765
Length = 959
Score = 1065 bits (551), Expect = 0.0
Identities = 557/559 (99%)
Strand = Plus / Minus
Query: 1 aagaattcaggtcaagaatctaggaaagagagatacagattctgttttctgtttagtaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 aagaattcaggtcaagaatctaggaaagagagatacagattctgttttctgtttagtaca 700
Query: 61 taattttcaattcaagagatgcttgtagaatcatgttgttctatcaataactcccaaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 taattttcaattcaagagatgcttgtagaatcatgttgttctatcaataactcccaaata 640
Query: 121 gctgccgaatcaaaacgtcagtgctggaagatggggagaaatggaaaactgatttattca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 gctgccgaatcaaaacgtcagtgctggaagatggggagaaatggaaaactgatttattca 580
Query: 181 ttcttagtcaataaaataagcaggcagtcgccaggttataaacaccctatgcaaagtgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ttcttagtcaataaaataagcaggcagtcgccaggttataaacaccctatgcaaagtgag 520
Query: 241 atttacagacataatatcagaagatggaattatcccagtttaaaacatagcgctgttgaa 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 acttacagacataatatcagaagatggaattatcccagtttaaaacatagcgctgttgaa 460
Query: 301 gcaagttctagtagaatttacaaggggacgcctcaaatgatcaggaactgggggcctttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 gcaagttctagtagaatttacaaggggacgcctcaaatgatcaggaactgggggcctttg 400
Query: 361 ggagtcagcacctccacccctgagatttgctaccagcaacttcaatttgcattttccaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ggagtcagcacctccacccctgagatttgctaccagcaacttcaatttgcattttccaga 340
Query: 421 aggcaggttagagtgttttctagaaacactgtaggggaaaggagaaaaacaatcaggctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aggcaggttagagtgttttctagaaacactgtaggggaaaggagaaaaacaatcaggctg 280
Query: 481 gacgcatccgctttgtttaaaacgtcccgttactcgggactgttaggtttataaatcaaa 540
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gacgcatccgatttgtttaaaacgtcccgttactcgggactgttaggtttataaatcaaa 220
Query: 541 attatgtgtccagcaaggg 559
|||||||||||||||||||
Sbjct: 219 attatgtgtccagcaaggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
