Query= MSMg01no514_l05.b1 MSMg01no514_l05.b1 CHROMAT_FILE:
MSMg01no514_l05.b1 PHD_FILE: MSMg01no514_l05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:41 2005
(691 letters)
>mm_chr1_130033650_130034740
Length = 1091
Score = 1321 bits (683), Expect = 0.0
Identities = 686/687 (99%)
Strand = Plus / Minus
Query: 5 gaattcaggttttgtgcaggctaagcatgcactattctactgagctacattatcaaaagc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 gaattcaggttttgtgcaggctaagcatgcactattctactgagctacattatcaaaagc 665
Query: 65 ttagtatttcctccctgctgaatatataattagcctgtagctacattaagaaagatttcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ttagtatttcctccctgctgaatatataattagcctgtagctacattaagaaagatttcc 605
Query: 125 gtgcctgataactcattcattacctaagattagtgtaataatgctcctctctttttgcta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gtgcctgataactcattcattacctaagattagtgtaataatgctcctctctttttgcta 545
Query: 185 tcaataaaaaatgtgtagtatgctaactaggtatctgccttggtacttgtgataaataac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tcaataaaaaatgtgtagtatgctaactaggtatctgccttggtacttgtgataaataac 485
Query: 245 ctcccaaagagatatcaaaatggaaaagacagaggtgtgagaaatacagtagataaggac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ctcccaaagagatatcaaaatggaaaagacagaggtgtgagaaatacagtagataaggac 425
Query: 305 taaatcctcagcattctctaagattaaaatggaatactggctttaaaccaatcaggcgat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 taaatcctcagcattctctaagattaaaatggaatactggctttaaaccaatcaggcgat 365
Query: 365 attttaaattagtatactattatgtttctatgtaaaaattaaagataataaaatactgac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 attttaaattagtatactattatgtttctatgtaaaaattaaagataataaaatactgac 305
Query: 425 tcaattataaaagaccattaaaaggcatcagtttaaaatgaaaagatttgagccagcagt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tcaattataaaagaccattaaaaggcatcagtttaaaatgaaaagatttgagccagcagt 245
Query: 485 ggtggtgcatacattaatcccagcgctaggaaggcagaaacaagccaatctcttgagttc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ggtggtgcatacattaatcccagcgctaggaaggcagaaacaagccaatctcttgagttc 185
Query: 545 aaggccagcctggtctacagaatgagttccagaactatacagataaagtcttccttgaaa 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 184 aaggccagcctggtctacagaatgagttccagaactatacagataaagtcttcctcgaaa 125
Query: 605 caacaaaaacaaagagacaccatcccaaagtgaaaggaaagagtaagctgcagtaatttc 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 caacaaaaacaaagagacaccatcccaaagtgaaaggaaagagtaagctgcagtaatttc 65
Query: 665 atttatattacactccactggatgata 691
|||||||||||||||||||||||||||
Sbjct: 64 atttatattacactccactggatgata 38
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space: 736161
Effective search space used: 736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_l05.g1 MSMg01no514_l05.g1 CHROMAT_FILE:
MSMg01no514_l05.g1 PHD_FILE: MSMg01no514_l05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:41 2005
(648 letters)
>mm_chr1_130001619_130002665
Length = 1047
Score = 1224 bits (633), Expect = 0.0
Identities = 645/649 (99%), Gaps = 3/649 (0%)
Strand = Plus / Plus
Query: 1 tttgtatggaaggtctgatgaaaatacaggggactacattcttttactatttgtgggacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtatggaaggtctgatgaaaatacaggggactacattcttttactatttgtgggacc 260
Query: 61 attttataaggctaatctaacctaacctcggttaataatggggaggataatgcttaatct 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attttatgaggctaatctaacctaacctcggttaataatggggaggataatgcttaatct 320
Query: 121 atggagctgtaaatagactatgtaaagctactaggattgtgtctcacatgtatatatttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggagctgtaaatagactatgtaaagctactaggattgtgtctcacatgtatatatttg 380
Query: 181 ttacattaagtttttatctttgttttctcattttcatatttagagaatgaatttgctgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttacattaagtttttatctttgttttctcattttcatatttagagaatgaatttgctgtt 440
Query: 241 catatgcagagtattgttgcagtctcaaaaatctcttctactgttgagtgttaatgtaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catatgcagagtattgttgcagtctcaaaaatctcttctactgttgagtgttaatgtaca 500
Query: 301 cagtggcttaaaacaatatctcatagccaatttttttgtttttgttttattacatttact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagtggcttaaaacaatatctcatagccaatttttttgtttttgttttattacatttact 560
Query: 361 ggggtacggggcgcagcacagaagtaccatgatacattttaggagggtggaggacagtgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggggtacggggcgcagcacagaagtaccatgatacattttaggagggtggaggacagtgg 620
Query: 421 taaggttaggagaaatcagttcttcttctatcctattggtctctgggattgaactcaggt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taaggttaggagaaatcagttcttcttctatcctattggtctctgggattgaactcaggt 680
Query: 481 ggtctgatttgaaggccaagtgcctttatgcactaaaccatcttgctagcctttagccat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggtctgatttgaaggccaagtgcctttatgcactaaaccatcttgctagcctttagccat 740
Query: 541 ttttttttttaagcagacagaatatatgaaattggtcattgggtatcaaagagaattttg 600
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttttttttt-aagcagacagaatatatgaaattggtcattgggtatcaaagagaattttg 799
Query: 601 tca-agcacagtatcttttttccttttgtttaaaatttctgcgtttgga 648
||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tcata-cacagtatcttttttccttttgtttaaaatttctgcgtttgga 847
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1047
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1037
Effective search space: 661606
Effective search space used: 661606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
