Query= MSMg01no514_p20.b1 MSMg01no514_p20.b1 CHROMAT_FILE:
MSMg01no514_p20.b1 PHD_FILE: MSMg01no514_p20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:06 2005
(625 letters)
>mm_chr1_139022747_139023766
Length = 1020
Score = 1123 bits (581), Expect = 0.0
Identities = 610/621 (98%), Gaps = 5/621 (0%)
Strand = Plus / Minus
Query: 5 gaattcacaccagcctcttcactggtgcagctgattgtcacaggaaaagaatttgcaatg 64
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 gaattcacaccaggcacttcactggtgcagctgattgtcacaggaaaagaatttgcaatg 761
Query: 65 cagttgttcatcttgggcaaatccacacacattctatttccaaataagaaaaatgtgggg 124
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 cagttgtttatcttgggcaaatccacacacattctatttccaaataagaaaaatgtgggg 701
Query: 125 ggttaagaatcttgagatcttcaaatctcgtacccgtgtttgacattactcctggtgggt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 ggttaagaatcttgagatcttcaaatctcgtacccgtgtttgacattactcctggtgggt 641
Query: 185 tccatctactcatgtgcaagctgagttcagacccatcaccattaaaattatacaagaggt 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 640 tccatctactcatgtgcaagctgagttcagacccatcaccattaaaattatacaag-gg- 583
Query: 245 ggggggggggaagcttctaccttcactatctcaactaaaactcaaaatcaagggaattta 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 -gggggggggaagcttctaccttcactatctcaactaaaactcaaaatcaagggaattta 524
Query: 305 cacaaagtataagtatcccttaatcagccttcactctagaagtaagaagccgctaacaat 364
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 cacaaagtttaagtatcccttaatcagccttcactctagaagtaagaagccgctaacaat 464
Query: 365 gagagcaaagttaacgaagcccaggacagtgccctttgtcttatcagtcttttgccctca 424
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 aagagcaaagttaatgaagcccaggacagtgccctttgtcttatcagtcttttgccctca 404
Query: 425 agctgatgtcagggaagcctgacttgccctccatggagaagtttgcattcctactgtgaa 484
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 403 agctgatgtcagggaagcctgac--gccctccatggagaagtttgcattcctactgtgaa 346
Query: 485 cttgtgaggtttagacatagtcctgcaggtgtttccaagagagggcatctccactgaaag 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 cttgtgaggtttagacatagtcctgcaggtgtttccaagagagggcatctccactgaaag 286
Query: 545 gtgattttataggtatatatataaaatcaagagagataaaatatgaatttaagtgagaag 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gtgattttataggtatatatataaaatcaagagagataaaatatgaatttaagtgagaag 226
Query: 605 agaaatgataatttaatctta 625
|||||||||||||||||||||
Sbjct: 225 agaaatgataatttaatctta 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1020
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1010
Effective search space: 621150
Effective search space used: 621150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_p20.g1 MSMg01no514_p20.g1 CHROMAT_FILE:
MSMg01no514_p20.g1 PHD_FILE: MSMg01no514_p20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:06 2005
(594 letters)
>mm_chr1_138856832_138857820
Length = 989
Score = 1102 bits (570), Expect = 0.0
Identities = 586/594 (98%), Gaps = 5/594 (0%)
Strand = Plus / Plus
Query: 1 agaaaggctccagtccgtgttctcctggactctgcactttttccagcatgtatgacctgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaaggctccagtccgtgttctcctggactctgcactttttccagcatgtatgacctgc 260
Query: 61 tgtaaaccatgtctccagtttcatgatggtttctaatcagaagaaaggaagctttcaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtaaaccatgtctccagtttcatgatggtttctaatcagaagaaaggaagctttcaata 320
Query: 121 ggcttcgactggtcacatgaccctgtgccggttgataagaggaccctgttataaagtgac 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcttcaactggtcacatgaccctgtgccggttgataagaggaccctgttataaagtgac 380
Query: 181 agcaaaagagataagaactcttggcagataatggcaaagaaatgattaactcagaaaagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcaaaagagataagaactcttggcagataatggcaaagaaatgattaactcagaaaagg 440
Query: 241 aggggttcttctgcagcccagagtgtggaaagttgtaaagccaaggggtcaggagatcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggggttcttctgcagcccagagtgtggaaagttgtaaagccaaggggtcaggagatcat 500
Query: 301 acttagtggataaaaactccaaaccacctcaagtccactaactaaactgcagcttgtgac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acttagtggataaaaactccaaaccacctcaagtccactaactaaactgcagcttgtgac 560
Query: 361 atggccctttgatgtcactgcttctggcatggggaaggacagactctgctcttctgacct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atggccctttgatgtcactgcttctggcatggggaaggacagactctgctcttctgacct 620
Query: 421 ctgcaaatacatcttagacgataacattggcggacattaattctttaaatgatgactgta 480
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgcaaatacattttagatgataacattggcggacattaattctttaaatgatgactgta 680
Query: 481 gatatgattgacactttgaaaccctacaggagcacttgcaagctcgtgggtatttactta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gatatgattgacactttgaaaccctacaggagcacttgcaagctcgtgggtatttactta 740
Query: 541 ccatttgaccagttgccttaaaaaaaaaaaaacaaccctgtatgtttgttagaa 594
||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 741 ccatttgaccagttgccttaaaaaaaa-----caaccctgtatgtttgttagaa 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 989
Length adjustment: 10
Effective length of query: 584
Effective length of database: 979
Effective search space: 571736
Effective search space used: 571736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
