Query= MSMg01no515_c06.b1 MSMg01no515_c06.b1 CHROMAT_FILE:
MSMg01no515_c06.b1 PHD_FILE: MSMg01no515_c06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:20 2005
(701 letters)
>mm_chr1_165973077_165974178
Length = 1102
Score = 1272 bits (658), Expect = 0.0
Identities = 687/704 (97%), Gaps = 14/704 (1%)
Strand = Plus / Minus
Query: 3 gaattccccaagtgg-----attcccaagggagggtgggcaggctaattagctcaactct 57
||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 755 gaattccccaagtggaagaaa----caagggagggtgggcaggctaattagctcaactct 700
Query: 58 tcctgagtgtagccaggctgcctggagactgctgtttgcaggggtgagagaagactccgg 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 tcctgagtgtagccaggctgcctggagactgctgtttgcaggggtgagagaagactccgg 640
Query: 118 acgagagaaaagccccctgctctgttttccttggccacttgcgccacttgttttaaaagg 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 acgagagaaaagccccctgctctgttttccttggccacttgcgccacttgttttaaaagg 580
Query: 178 taggatttttctcaggaactattcttagctttgttctcagtccttcccagtagaaaactc 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 taggatttttctcaggaactattcttagctttgttctcagtccttcccagtagaaaactc 520
Query: 238 ccagcctggtcatgtttcaagatataactttgatttttattgttgccagagaggagatgc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ccagcctggtcatgtttcaagatataactttgatttttattgttgccagagaggagatgc 460
Query: 298 agaagttccaaataacaataagatgccactaaaagtccaaggagtaagggtcatttttcc 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 agaagttccaaataacaataagatgccactaaaagtccaaggagtaagggtcatttttcc 400
Query: 358 ttaaaattaaaagtaggtgatttgagagaggagacaggaacatacctgaagtttctaggt 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ttaaaattaaaagtaggtgatttgagagaggagacaggaacatacctgaagtttctaggt 340
Query: 418 ctctctacagctatatcagtcatagaaaccaaaataagatggttcattaggcaaatgttc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ctctctacagctatatcagtcatagaaaccaaaataagatggttcattaggcaaatgttc 280
Query: 478 tctatttggacatggctgtatagctaatagtgaatatttaaatgcagcattaatgagcaa 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tctatttggacatggctgtatagctaatagtgaatatttaaatgcagcattaatgagcaa 220
Query: 538 tcactgcagaccactagtttacatatattgctttgtacttatttcatgacctgaaaggta 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 tcactgcagaccactagtttacatatattgctttgtacttatttcatgacctgaaaggta 160
Query: 598 gccattaaatccatcttacagaagagaaaacagaaaaccagagaggttaaaattttgtct 657
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 159 gccattaaatccatcttacaaaagagaaaacagaaaaccagagaggttaaaaatttgtcc 100
Query: 658 tttttttttttttttcagctactaactggcagaacttgggttca 701
|||||||||| |||||||||||||||||||||||||||||
Sbjct: 99 tttttttttt-----cagctactaactggcagaacttgggttca 61
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1102
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1092
Effective search space: 754572
Effective search space used: 754572
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no515_c06.g1 MSMg01no515_c06.g1 CHROMAT_FILE:
MSMg01no515_c06.g1 PHD_FILE: MSMg01no515_c06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:20 2005
(663 letters)
>mm_chr1_165788712_165789774
Length = 1063
Score = 1168 bits (604), Expect = 0.0
Identities = 650/668 (97%), Gaps = 9/668 (1%)
Strand = Plus / Plus
Query: 1 tctgatcatgaactggctcaaaatagggaatttggactcttttttttttaatttt----t 56
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 199 tctgatcatgaactggctcaaaatagggaatttggactctttttttttt--ttttatttt 256
Query: 57 tttttcagaaaaatacagtttaaattataatgagaagttgcggtatacttggcatcctgc 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tttttcagaaaaatacagtttaaattataatgagaagttgcggtatacttggcatcctgc 316
Query: 117 tgaattagtagggtggtttctgattatttatccccactgtaatggaagattatgagagtc 176
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 317 tgaattagtagggtggtttctgatcatttatccccactgtaatggaagattatgagagtc 376
Query: 177 aggacttctgaggtcatttaagacccagtaacccagtagaaggccaggcaggcctgtgcc 236
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aggacttctgaggtaatttaagacccagtaacccagtagaaggccaggcaggcctgtgcc 436
Query: 237 -aggtggccttactcaagcagaagagaattcttctggtctgtatcagtgagcctttcact 295
||||| ||||||||||||||||| | | ||||||||| ||||||||||||||||| |||
Sbjct: 437 caggtg-ccttactcaagcagaagcgtactcttctggtgtgtatcagtgagcctttaact 495
Query: 296 tacgtgatacaggagagaatcagctgagcatgctattttcaaaagctccacgagtgattg 355
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 496 tacgtgatacaggagagaatcagctgagcatgctattttcaaaagctccac-agtgattg 554
Query: 356 taacgcacagccagaaaatgcaccactgctctaagtaaatgtaagccccagcattgtaag 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 taacgcacagccagaaaatgcaccactgctctaagtaaatgtaagccccagcattgtaag 614
Query: 416 taccaggaaacgagaacagaaaaattagtccttcagagatcattagtgtctatactgccc 475
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 615 taccaggaaacgagaacagaaaaattaatccttcagagatcattagtgtctatactgcct 674
Query: 476 tctggatgcaccagcccagttcactgccttgaaactgtcttctctcttgacttgtgaaaa 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tctggatgcaccagcccagttcactgccttgaaactgtcttctctcttgacttgtgaaaa 734
Query: 536 gtccaagaaacagaacctcaatagctcaggcactaagatcaacaattaataaattggacc 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gtccaagaaacagaacctcaatagctcaggcactaagatcaacaattaataaattggacc 794
Query: 596 ttatgaaactgaaaagcttctataaagaaagagacaccatcaatagggcaaaaccacaga 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 ttatgaaactgaaaagcttctataaagaaagagacaccatcaatagggcaaaaccacaga 854
Query: 656 ccgcagaa 663
||||||||
Sbjct: 855 ccgcagaa 862
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
