Query= MSMg01no515_c07.b1 MSMg01no515_c07.b1 CHROMAT_FILE:
MSMg01no515_c07.b1 PHD_FILE: MSMg01no515_c07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:20 2005
(707 letters)
>mm_chr1_88147039_88148145
Length = 1107
Score = 1193 bits (617), Expect = 0.0
Identities = 678/703 (96%), Gaps = 9/703 (1%)
Strand = Plus / Plus
Query: 5 ggaattcaacttgaaggttcctacctagtgggtgggcagagcccaggcaaggccactgga 64
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcaacttgaagggccctacctagtgggtgggcagagcccaggcaaggccactgga 264
Query: 65 agtccttcaggtgtccctcaagcccagcaggtaggagggaaactccggcttacagaaatg 124
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtcccccaggtgcccctcaagcccagcaggtaggagggaaactccggcttacagaaatg 324
Query: 125 gctaatgagtggtcactctgagtgccagatgcctcgctgggtcctattttcaaacatctg 184
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 325 gctaatgagtggtcactctcagtgccagatgcctcgctgggccctattttcaaacatctg 384
Query: 185 aaaagcaattgtaagtgatgtgttagttgtcccctgtaggaggcactgcaaggcacgagc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaaagcaattgtaagtgatgtgttagttgtcccctgtaggaggcactgcaaggcacgagc 444
Query: 245 tccacgcagcagagagccagcagtacctcggactctactggaaggagccctcgtggcact 304
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 445 tccacgcagcagagagccagcagtacctcggactctactggaaggagccctcatggcact 504
Query: 305 gaccctttctccagtagcttaaccactggctttgtttcagtctcactaagtaccccaggc 364
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaccctttctccggtagcttaaccactggctttgtttcagtctcactaagtaccccaggc 564
Query: 365 tagccgtaaacttgattcacgtcccaggagaaggctccttgggaaggcccaacttctaac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tagccgtaaacttgattcacgtcccaggagaaggctccttgggaaggcccaacttctaac 624
Query: 425 tagcctagcagaggtctctgcctccctcccagatgctacacacaggcatgccccactaca 484
|||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 625 tagcctagcaaaagtctctgcctccctcccagatgctacatacaggcatgccccactaca 684
Query: 485 ccgggctggaatgttggcttttttctcttcctcctcctcctcctcttcctcctcttcctg 544
|| |||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 685 ccaggctggaatgttggcttttttctc------ctcctcctcctcttcctc---ttcctg 735
Query: 545 ctctttctcctcctcttccccctcctcctcctccttctcttcagtccacctggttttttt 604
||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 736 ctctttctcctcctcctctccctcttcctcctccttctcttcagtccacctggttttttt 795
Query: 605 ctcctttcttaccttcaaagatccaggcctcttcaaagcttagagcagctactctactgt 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 ctcctttcttaccttcaaagatccaggcctcttcaaagcttagagcagctactctactgt 855
Query: 665 tctcaactctacttcttcccatgactttctgagttctatactg 707
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 tctcaactctacttcttcccatgactttctgagttctatactg 898
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 707
Length of database: 1107
Length adjustment: 10
Effective length of query: 697
Effective length of database: 1097
Effective search space: 764609
Effective search space used: 764609
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no515_c07.g1 MSMg01no515_c07.g1 CHROMAT_FILE:
MSMg01no515_c07.g1 PHD_FILE: MSMg01no515_c07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:20 2005
(610 letters)
>mm_chr1_88328308_88329317
Length = 1010
Score = 944 bits (488), Expect = 0.0
Identities = 500/504 (99%)
Strand = Plus / Minus
Query: 107 gttctaggtgcagttctagactctggggagtccacatccatggagcctgcttgcttcact 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1010 gttctaggtgcagttctagactctggggagtccacatccatggagcctgcttgcttcact 951
Query: 167 gtgatgtgagggctaagtttgaggacaagcctattagctcaggctccttttcttaacaaa 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950 gtgatgtgagggctaagtttgaggacaagcctattagctcaggctccttttcttaacaaa 891
Query: 227 gcgagacaaacgtaaggctggaggtggtggtgtcgcacacccttgattccaactcacaga 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 gcgagacaaacgtaaggctggaggtggtggtgtcgcacacccttgattccaactcacaga 831
Query: 287 aggcacagtcaggcagatctctgtgagttcaaggccagcctggtgtacatagcagtttct 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 aggcacagtcaggcagatctctgtgagttcaaggccagcctggtgtacatagcagtttct 771
Query: 347 ggtcagccagggctgtgtagtgagacatcactcaacagataaatgacagtgagactccca 406
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 770 ggtcagccagggctgtgtagtgagacgtcactcaacagataaatgacagtgagactccca 711
Query: 407 ttgccttgttgaatcccagttacatatccaaagtcccaactctaaatacctttatttttg 466
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 ttgcctggttgaatcccagttacatatccaaagtcccaactctaaatacctttatttttg 651
Query: 467 gagattaagtttctggtaaattgtaattttagtgtgttggatttttgatgttttggtttt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gagattaagtttctggtaaattgtaattttagtgtgttggatttttgatgttttggtttt 591
Query: 527 gtgtgtgcctatgtttcttaaaattaaaattttaaattactagccaggcagtggtggcgc 586
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 590 gtgtgtgcctatgtttcttaaaattaaaattttaaattactagccaggcagtggtggcac 531
Query: 587 atgcctttaatcccagcacttggg 610
| ||||||||||||||||||||||
Sbjct: 530 acgcctttaatcccagcacttggg 507
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space: 600000
Effective search space used: 600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
