BAC Information

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BAC

Clone NameMSMg01-515G23
Chromosome1 (Build37)
Map Location 53,075,901 - 53,214,978
singlet/doubletdoublet
Overlap geneGdf8
Upstream geneStat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik
Downstream gene1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b, Hecw2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-515G23.T7 (MSMg01no515_g23.b1)MSMg01-515G23.TJ (MSMg01no515_g23.g1)
ACCAG587675AG587676
length774787
length of high quality
(start - end)		272 (51 - 322)532 (83 - 614)
definitionCHROMAT_FILE: MSMg01no515_g23.b1 PHD_FILE: MSMg01no515_g23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:45 2005CHROMAT_FILE: MSMg01no515_g23.g1 PHD_FILE: MSMg01no515_g23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,075,901 - 53,076,167)(53,214,447 - 53,214,978)
sequence
NNNNTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTAGGAT
CCGCGGAATTCCAGCCAATGGCTAGAGTCAAGGATTTGTTGGTCAGGCCT
GGGTTTGAATCACAGTCTTAGTGTGACTGGGGCCAAGGTTTTAACTTGTC
TTTCAAATGGTTGTAATCAGCCTGACAAGTTTGCTGAAGAGATGAGAAAT
AGCATACAAAACTATTCCTCCAAGCATGTGATACCCAATCACACACACTT
CTCCTTTGTTTGTTTGAGGGGCAAGTGGACTAACTGGTCATGTTGAGCAG
GGCATATCCCCTGGGATCCCAGAATTGAGAACGGCAGGCATGGGACCAGA
TCCCTGACAAACTATGTGATCTGGAATATGTAACTAGGAATCCCCACTGA
GAAGGACATTAGAATCNACCACATAGCAATAAAAACCTGGAGTTTTCCAT
GCTAATGAGGGATCTAGGTAGGACCNCAGTGGTCAGCCAAGGAGCTTCCC
TTTCAGGGGATATCCTCCCAAAAATCCNGGGTTACCCTGAGGAAGGGGAT
TCGTTTCCTTTACCATCAAAAAAAAACAGCTCGGAAAAACAAGGACCCGT
CTCCTTCATCACGGTTTCTTTGTGGGAGGCCTTTCTTCCATACGCTTTGA
CTTGTGGGGTTCAGAACCAAGCGAGGTTTNTCGNCAGGTCTGGGATAACG
CATCTTTTCCGTGATCAGTGAGGAGTGGGGGCTAAACATGAAGTGGGGAA
NCGTATTCCCCCGTCCCGAGCTAA

NAATTTCCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGGAGAAAGAAGCATCT
TTTACATAATGACTAGAATACTCAAAATTAATATGGAAACCACTCATGGT
ACCGGTAGCTGTGGCTTACAGGATAATTTTAGAGTATTCCAAAAGGAAAT
GAGGGGTAACTTGTACATAAAGTGCCAGATTGGCACGTTACACCTGTTAG
TGTACATCGTTTGGAACAGCTGTGTCTTTTATTGTCAGTAAACAGATGCA
GAACATACTGGAATGTTTTAAAGCAATATGTTAATCCTGCCTTCCCCTCC
TGACCGTCTCACTGTGTAGTGATTAAATATTGGCTGGGCAGCTGTTACCC
ACAGCTATAGCATTGCTAGTTAATTTCTTCTTCCCAGGCCCACGTGCTTT
AAATTGTGAGGAAATACTCTTTAACTTTTAAGTGTTTGAAAATGTAGTTT
ATTTAATATAAATTGATTTCTAAGGATAAGTTACTTGAAAATTATGAACA
ATTCATGCATTCTAAATTCTTATACATATGTTTGCAAATTACTATTCTTG
ATAGGATAAACAATGTTTAGATTGCTTTTTAAATTTTTTCAATTGTTTCG
TGAATGTAAAATGAGTTTTAATATAATCACTTGAATTTTATTTTTGATAA
TTTCCTTTCAGAAACTGAACAGGAAATGAATCTTAAGTATTTTTGAACTG
AAGTATATTACATTTTCTTTATACAGTTGATTCACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no515_g23.b1 MSMg01no515_g23.b1 CHROMAT_FILE:
MSMg01no515_g23.b1 PHD_FILE: MSMg01no515_g23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:45 2005
         (272 letters)



>mm_chr1_53075696_53076367
          Length = 672

 Score =  455 bits (235), Expect = e-132
 Identities = 259/267 (97%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattccagccaatggctagagtcaaggatttgttggtcaggcctgggtttgaatcacag 65
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccagccaatggaaagagtcaaggatttgttggtcaggcctgggtttgaatcacag 265

                                                                       
Query: 66  tcttagtgtgactggggccaaggttttaacttgtctttcaaatggttgtaatcagcctga 125
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 266 tcttagtgtgactggggccaaggatttaacttgtctttcaaatggttgtaatcagcctga 325

                                                                       
Query: 126 caagtttgctgaagagatgagaaatagcatacaaaactattcctccaagcatgtgatacc 185
           ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| 
Sbjct: 326 caattttgctgaagagatgagaaatagcatacaaaactattcctccaggcatgtgatact 385

                                                                       
Query: 186 caatcacacacacttctcctttgtttgtttgaggggcaagtggactaactggtcatgttg 245
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 caatcacatacacttctcctttgtttgtttgaggggcaagtggactaactggtcatgttg 445

                                      
Query: 246 agcagggcatatcccctgggatcccag 272
           |||||| ||||||||||||||||||||
Sbjct: 446 agcaggccatatcccctgggatcccag 472


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no515_g23.g1 MSMg01no515_g23.g1 CHROMAT_FILE:
MSMg01no515_g23.g1 PHD_FILE: MSMg01no515_g23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:45 2005
         (532 letters)



>mm_chr1_53214247_53215178
          Length = 932

 Score = 1013 bits (524), Expect = 0.0
 Identities = 530/532 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggagaaagaagcatcttttacataatgactagaatactcaaaattaatatggaaacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 atggagaaagaagcatcttttacataatgactagaatactcaaaattaatatggaaacca 673

                                                                       
Query: 61  ctcatggtaccggtagctgtggcttacaggataattttagagtattccaaaaggaaatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ctcatggtaccggtagctgtggcttacaggataattttagagtattccaaaaggaaatga 613

                                                                       
Query: 121 ggggtaacttgtacataaagtgccagattggcacgttacacctgttagtgtacatcgttt 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ggggtaacttgtacgtaaagtgccagattggcacgttacacctgttagtgtacatcgttt 553

                                                                       
Query: 181 ggaacagctgtgtcttttattgtcagtaaacagatgcagaacatactggaatgttttaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ggaacagctgtgtcttttattgtcagtaaacagatgcagaacatactggaatgttttaaa 493

                                                                       
Query: 241 gcaatatgttaatcctgccttcccctcctgaccgtctcactgtgtagtgattaaatattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gcaatatgttaatcctgccttcccctcctgaccgtctcactgtgtagtgattaaatattg 433

                                                                       
Query: 301 gctgggcagctgttacccacagctatagcattgctagttaatttcttcttcccaggccca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gctgggcagctgttacccacagctatagcattgctagttaatttcttcttcccaggccca 373

                                                                       
Query: 361 cgtgctttaaattgtgaggaaatactctttaacttttaagtgtttgaaaatgtagtttat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 cgtgctttaaattgtgaggaaatactctttaacttttaagtgtttgaaaatgtagtttat 313

                                                                       
Query: 421 ttaatataaattgatttctaaggataagttacttgaaaattatgaacaattcatgcattc 480
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ttaatacaaattgatttctaaggataagttacttgaaaattatgaacaattcatgcattc 253

                                                               
Query: 481 taaattcttatacatatgtttgcaaattactattcttgataggataaacaat 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 taaattcttatacatatgtttgcaaattactattcttgataggataaacaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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