Query= MSMg01no515_i01.b1 MSMg01no515_i01.b1 CHROMAT_FILE:
MSMg01no515_i01.b1 PHD_FILE: MSMg01no515_i01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:51 2005
(714 letters)
>mm_chr1_78307880_78308993
Length = 1114
Score = 1145 bits (592), Expect = 0.0
Identities = 680/726 (93%), Gaps = 31/726 (4%)
Strand = Plus / Plus
Query: 7 gaattcatttgaaaatttccagtaggctagttgtgtattctcagctagagaaattat--- 63
||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
Sbjct: 200 gaattcatttgaaaagtggcagtaggctagttgtgtattctcagctagagaaattcttca 259
Query: 64 -aatattttcactttacagttacttcactgtgttgcacggcatgctgatagcttttagat 122
||||||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct: 260 aaatattttcactttatagttacttcac----------ggcatgctgatagctttgagat 309
Query: 123 taattcaagacatctctctttgccagagccttgcctcaaaaggtgctagcacataagccc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 taattcaagacatctctctttgccagagccttgcctcaaaaggtgctagcacataagccc 369
Query: 183 aatgccccacccccacgggaagcgttttcctgtacaggcgctctgtttaggctcaggacc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aatgccccacccccacgggaagcgttttcctgtacaggcgctctgtttaggctcaggacc 429
Query: 243 ggcgcggggg-------------ctgcactctatccgacttgtctcccctgtacctgctc 289
||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 430 agcgcgggggtgggggtggggggctgcactctatccgacttgtctcccctgtacctgctc 489
Query: 290 ttcctcattcaggactgaatttttccactaatgtttcttaaattgtttttacacaatccc 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ttcctcattcaggactgaatttttccactaatgtttcttaaattgtttttacacaatccc 549
Query: 350 cttgattacttgcctgcacattctggagaaggcttcttccttcttgtagtcccagatagt 409
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 550 cttgattacttgcctgcacattctggggaaggcttcttccttcttgtagtcccagatagt 609
Query: 410 ctggggaatcagggagtggggttctcgttccgagcgcttggattactgaagtccatgaaa 469
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 610 ctggggaatcaaggagtggggttctcgttcccagcgcttggattactgaagtccatgaaa 669
Query: 470 taagtaaaagaaaactgagagttcaggatattaaatccctgtagtagccataacaggaaa 529
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 taagtaaaagaaaactgaaagttcaggatattaaatccctgtagtagccataacaggaaa 729
Query: 530 aaaattaactcaagaccttttgataagggaagggtttgtgagggtttttttgtttttagg 589
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 730 aaaattaactcaagaccttttgataagggaagggttcatgaggttttttttgtttttagg 789
Query: 590 tt--tgtttcaaaagatgtggaaaggttaatccttaacaaacacatggaacgttccccct 647
|| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 ttcat-ttt-aaaagatgtggaaaggttaatccttaacaaacacatggaacgttccccct 847
Query: 648 gagaagtaattgcatccctgcccccagataactcacagggcttcaagggggccactgggg 707
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 gagaagtaattgcatccctgcccccagataactcacagggcttcaagggggccactggga 907
Query: 708 taactc 713
||||||
Sbjct: 908 taactc 913
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 714
Length of database: 1114
Length adjustment: 10
Effective length of query: 704
Effective length of database: 1104
Effective search space: 777216
Effective search space used: 777216
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no515_i01.g1 MSMg01no515_i01.g1 CHROMAT_FILE:
MSMg01no515_i01.g1 PHD_FILE: MSMg01no515_i01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:51 2005
(679 letters)
>mm_chr1_78454923_78456001
Length = 1079
Score = 1266 bits (655), Expect = 0.0
Identities = 673/679 (99%)
Strand = Plus / Minus
Query: 1 tcctaggtgcacagttctgccccagatcagtgcagacttaacctgggattgcactggtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 tcctaggtgcacagttctgccccagatcagtgcagacttaacctgggattgcactggtaa 820
Query: 61 ccagaaaaccctggggaaactgagagaggctctcttactggtcccactagagataccttt 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 cctgaaaaccctggggaaactgagagaggctctcttactggtcccactagagataccttt 760
Query: 121 attgaagagctaaagagcagtcacttaagtagagccttgggtttgctttgtgtggtgctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 attgaagagctaaagagcagtcacttaagtagagccttgggtttgctttgtgtggtgctg 700
Query: 181 gcacagtgattttagctaaaggcaggtaaaattataatgctcagaaaacagggaggaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 gcacagtgattttagctaaaggcaggtaaaattataatgctcagaaaacagggaggaatt 640
Query: 241 aggagcttggacaggaacggtaagtggggacctcgtacagagaggacctgggtgtgggct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 aggagcttggacaggaacggtaagtggggacctcgtacagagaggacctgggtgtgggct 580
Query: 301 aagcctccatctctccaggagacattaagtagctccctattgtggctacagctcctcata 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 aagcccccatctctccaggagacattaagtagctccctattgtggctacagctcctcata 520
Query: 361 gagagctagtcatagttattgcatcttctgtgagtccaaagtaggtgaactacaagtgat 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 519 gagagctagtcatagttattgcatcttctgtgagtccaaactaggtgaactacaagtgat 460
Query: 421 gaattgttaattgttaaaactcagtagatcaaatcttgggttattattaatctactgaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 459 gaattgttaattgttaaaactcagtagatcaaatcttgggttattattaatttattgaat 400
Query: 481 tctatagagcaaactgagttagagcatgaaatacttttaaactttgagttaggcattgcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tctatagagcaaactgagttagagcatgaaatacttttaaactttgagttaggcattgcc 340
Query: 541 ctgtactaatctattttccatgttcttagtgctcccaagaagatattgctgacaagcttg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ctgtactaatctattttccatgttcttagtgctcccaagaagatattgctgacaagcttg 280
Query: 601 gcctggatatctctgcaacaaaggcagtgcacataagtaatcccaaaaccgctgagttcc 660
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 279 gcctggatatctctgcaacaaaggcagtgcacataagtaatcctaaaaccgctgagttcc 220
Query: 661 aggtaacaactgggtaaaa 679
|||||||||||||||||||
Sbjct: 219 aggtaacaactgggtaaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space: 715161
Effective search space used: 715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
