Query= MSMg01no515_i17.b1 MSMg01no515_i17.b1 CHROMAT_FILE:
MSMg01no515_i17.b1 PHD_FILE: MSMg01no515_i17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:54 2005
(716 letters)
>mm_chr1_76246864_76247981
Length = 1118
Score = 1315 bits (680), Expect = 0.0
Identities = 705/714 (98%), Gaps = 2/714 (0%)
Strand = Plus / Minus
Query: 5 gaattcactagaccttacatcacacgtgttcagtggggagagacccagggagggtctaag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 gaattcactagaccttacatcacacgtgttcagtggggagagacccagggagggtctaag 859
Query: 65 atctatgcacagtcatgaaaatggcacaggactttacattgaacagagttgttaggcttc 124
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 858 atctatgcacagtcatgaaaatggcgcaggactttacattgaacagagttgttaggcttc 799
Query: 125 cctttcccttagatgtgctggatattatagcctcgaagaggagataggaggtaacaacaa 184
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 798 cctttcccttagatgtgctggatattatagccttgaagaggagataggaggtaacaacaa 739
Query: 185 gcttacttcctatcacggtatgtatgccactctggagaacgaatgcattgcattttgctt 244
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gcttacttcctatcacggtatatatgccactctggagaacgaatgcattgcattttgctt 679
Query: 245 ttaggattggctccttgacatcaattttagtgctactcatttgataaaggtcgctgttag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ttaggattggctccttgacatcaattttagtgctactcatttgataaaggtcgctgttag 619
Query: 305 aggaaacaatgaagccctgctgtcacgaaaggcacaggttgctggttatgagcctgtaac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aggaaacaatgaagccctgctgtcacgaaaggcacaggttgctggttatgagcctgtaac 559
Query: 365 tacaacctagcatccttgccctgcgctgtaactgctaagtgccctgagctagaccagata 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tacaacctagcatccttgccctgcgctgtaactgctaagtgccctgagctagaccagata 499
Query: 425 taactttataatcaattgtagtgctttccacagtcacattcccacacagctataagaaaa 484
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 taactttataatcaattatagtgctttccacagtcacattcccacacagctataagaaaa 439
Query: 485 cacagaaggaagatgacattttagtaagacggaaaatgacaatttttc--cccctacgaa 542
|||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||
Sbjct: 438 cacagaaggaagatgacattttagtaagacagaaaatgacaattttttttcccctaagaa 379
Query: 543 gagaagttaatgtcagttcatcagccataacagaacacgagcaaggacagactgttggag 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gagaagttaatgtcagttcatcagccataacagaacacgagcaaggacagactgttggag 319
Query: 603 acagcagtcaggaaatttcagacactgtccgtcatccactcactatatggctctgacctt 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 acagcagtcaggaaatttcagacactgtccgtcatccactcactatatggctctgacctt 259
Query: 663 cagtactgagaggctaactctgaccttatgcctaaatggcttcctcctgcacag 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cagtactgagaggctaactctgaccttatgcctaaatggcttcctcctgcacag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 716
Length of database: 1118
Length adjustment: 10
Effective length of query: 706
Effective length of database: 1108
Effective search space: 782248
Effective search space used: 782248
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no515_i17.g1 MSMg01no515_i17.g1 CHROMAT_FILE:
MSMg01no515_i17.g1 PHD_FILE: MSMg01no515_i17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:54 2005
(652 letters)
>mm_chr1_76069190_76070241
Length = 1052
Score = 1245 bits (644), Expect = 0.0
Identities = 650/652 (99%)
Strand = Plus / Plus
Query: 1 aggccttggaggagacatcaatagacaggatagataagcaagatttaggacacatccaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggccttggaggagacatcaatagacaggatagataagcaagatttaggacacatccaga 260
Query: 61 tggcagcagggctatgttagatctcagttgttgtacaacaaatcttctgcaaacagaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggcagcagggctatgttagatctcagttgttgtacaacaaatcttctgcaaacagaaag 320
Query: 121 gctaaaataataacaacatatttgtttacagagtctgagggtcataagtcaaagagtagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctaaaataataacaacatatttgtttacagagtctgagggtcataagtcaaagagtagc 380
Query: 181 taagctggatgtgtgcagtttagactcttgtcatgagagcgagtaaaactattgagaagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagctggatgtgtgcagtttagactcttgtcatgagagcgagtaaaactattgagaagg 440
Query: 241 tctgtgctaagatggcttcctggggctggaggctactcttgtaggagtcctcagttgttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgtgctaagatggcttcctggggctggaggctactcttgtaggagtcctcagttgttc 500
Query: 301 ttcacatgctggcttctaagaacaaggagaaagccaacctactttatatgacagcagtca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcacatgctggcttctaagaacaaggagaaagccaacctactttatatgacagcagtca 560
Query: 361 tttctgtgcacgctatttgctgaaagaagagtccccaagtagagtttatatttgcaagaa 420
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561 tttctgtgcactctatttgctgaaagaagagtcctcaagtagagtttatatttgcaagaa 620
Query: 421 gagctgtttttaaaatcacacaaaggtcaagggaatataatacagcagagggacgagaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagctgtttttaaaatcacacaaaggtcaagggaatataatacagcagagggacgagaaa 680
Query: 481 caaagagctggtgaagggtagatactgttgttggtaagctgacaaggaggtcagactgga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caaagagctggtgaagggtagatactgttgttggtaagctgacaaggaggtcagactgga 740
Query: 541 gtggaagtttgggtgggcttggggtgcaggtttagtcaggaaggtagccagggttcatgg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtggaagtttgggtgggcttggggtgcaggtttagtcaggaaggtagccagggttcatgg 800
Query: 601 gaggccatggggcaggtctttagaactattgttgggactttggctttttctt 652
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gaggccatggggcaggtctttagaactattgttgggactttggctttttctt 852
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space: 668964
Effective search space used: 668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
