BAC Information

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BAC

Clone NameMSMg01-515I20
Chromosome1 (Build37)
Map Location 157,223,299 - 157,292,113
singlet/doubletdoublet
Overlap geneXpr1
Upstream geneCacna1e, LOC671336, Ier5, Mr1, Stx6, EG667867, BC034090
Downstream geneEG433367, Acbd6, Lhx4, Qscn6, Cep350, LOC676894, Tor1aip1, Ifrg15, Tor1aip2, A230106N23Rik, Tdrd5, Nphs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-515I20.T7 (MSMg01no515_i20.b1)MSMg01-515I20.TJ (MSMg01no515_i20.g1)
ACCAG587764AG587765
length748751
length of high quality
(start - end)		681 (54 - 734)616 (84 - 699)
definitionCHROMAT_FILE: MSMg01no515_i20.b1 PHD_FILE: MSMg01no515_i20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:55 2005CHROMAT_FILE: MSMg01no515_i20.g1 PHD_FILE: MSMg01no515_i20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(157,291,473 - 157,292,113)(157,223,299 - 157,223,915)
sequence
NNTTTATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATTG
CCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACCGC
CTGGCCACAAGCAGAGAAAGCACTGAGAACATAGTTTGTGACATACAAAT
ATATACAGATCTCCTATATGTGCCATTTCTGTTCTACTCAAACCGAAGTT
TACCTAGCTTATTCTGTCAATATTACTCTATCATAATAGTGAAACCTGCA
AAATCAGGATTATTGTTTAAACCCATAGTTAGACCTCCATCTGAGTATAT
GGATATGCAGCATTTTGATGGAAAATTACACAATTAAAAAACCTTTTTCT
TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTAGTTTACA
AAATAGTTTTCAACCACCTCTAATTTAGACTTGTATAAACTTTAGCAACA
ATCAGATTTGAAGAAAATATCTATGAAAGTTTAAGATGAAACCTACATCA
CGGGCAGAGGTGTGAGTGATCATTCTCCCAGTTTTTGGACTTAGAGAGAC
AGTGCTATGGAATTCCAAGTGCATGCGTGACTTCCAGCAGGTGGTCCCTT
TGAAGGCTGGGTCATCAGGGGTTCATCTTTCCCAACCCCCTCTTGCTCTC
ACCCCACACCGTTTCCACATACTTCTCTGCTTGCAGGGTCTTCATGGA

NTTTTTTTCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGATAGCCAGGGCTA
CACAGAGAAACCCTGTCTTGGAAAACCAATACATACATGCTCATGCACAC
GTACGTATTCATGCACACATGCACATGTAGTAATATCTATAAAGACTTTC
CTCTGAGGTAGCCTAATCTAAAAGTTTGGGTGATGGTTTGCAGTTCTCCA
GGCCTCACCAGGCACTTTGTTTAGAGATCAGTGTGATGTGAATGACAAGA
GACTGTGTCAGTTATTATAGTAACCTGAACATTTTTTTTTTTGAGGGAAA
GCTAAGTTAGACAGAGTCTTGGATGTAGCACCAGGCTAAGTTTCAATTTA
CCATAGCCCAGGCTGGCTTCAAATCAGGATCTTCCTGCCTCCATTTCTGG
GCCACTACATTTAAGTGTACACTGTAATTTCATTCATTTTTCTGCTTTAG
CTACACAGTACATAACGCAAGCTACATTAAAACATGTATGATGATACAGG
TCACCCATAGACTCCTTAATGATAAAAAAGGGCATGACTTTTAGCAGGGT
CTTAAAGAAGTAGAAGTTGCTGGTAGCATTTCCTGAGAAAGCACATTCTA
TAAGACAGAACTAAGCATGCATGAATGTTAAAAATGCAAAGTAATTAGTT
TAGCCCAAGATCACAACTGTGGTGCTGACTACATTCACAGTACATGTGAA
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no515_i20.b1 MSMg01no515_i20.b1 CHROMAT_FILE:
MSMg01no515_i20.b1 PHD_FILE: MSMg01no515_i20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:55 2005
         (681 letters)



>mm_chr1_157291473_157292553
          Length = 1081

 Score = 1210 bits (626), Expect = 0.0
 Identities = 639/646 (98%), Gaps = 5/646 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactctgtagaccaggctggcctcaaactcagaaattgcctgcctctgcctccc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ggaattcactctgtagaccaggctggcctcaaactcagaaattgcctgcctctgcctccc 582

                                                                       
Query: 64  aagtgctgggattaaaggcgtgcgccaccaccgcctggccacaagcagagaaagcactga 123
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 581 aagtgctgggattaaaggcgtgcaccaccaccgcctggccacaagcagagaaagcactga 522

                                                                       
Query: 124 gaacatagtttgtgacatacaaatatatacagatctcctatatgtgccatttctgttcta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gaacatagtttgtgacatacaaatatatacagatctcctatatgtgccatttctgttcta 462

                                                                       
Query: 184 ctcaaaccgaagtttacctagcttattctgtcaatattactctatcataatagtgaaacc 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 461 ctcaaaccgaagtttacctagcttattctgtcaatattactctatcataatagtgaaatc 402

                                                                       
Query: 244 tgcaaaatcaggattattgtttaaacccatagttagacctccatctgagtatatggatat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tgcaaaatcaggattattgtttaaacccatagttagacctccatctgagtatatggatat 342

                                                                       
Query: 304 gcagcattttgatggaaaattacacaattaaaaaacctttttctttctttctttctttct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gcagcattttgatggaaaattacacaattaaaaaacctttttctttctttctttctttct 282

                                                                       
Query: 364 ttctttctttctttctttttttttttagtttacaaaatagttttcaaccacctctaattt 423
           ||||||||||||||     |||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ttctttctttcttt-----tttttttagtttacaaaatagttttcaaccacctctaattt 227

                                                                       
Query: 424 agacttgtataaactttagcaacaatcagatttgaagaaaatatctatgaaagtttaaga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 agacttgtataaactttagcaacaatcagatttgaagaaaatatctatgaaagtttaaga 167

                                                                       
Query: 484 tgaaacctacatcacgggcagaggtgtgagtgatcattctcccagtttttggacttagag 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 tgaaacctacatcacgggcagaggtgtgagtgatcattctcccagtttttggacttagag 107

                                                                       
Query: 544 agacagtgctatggaattccaagtgcatgcgtgacttccagcaggtggtccctttgaagg 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 agacagtgctatggaattccaagtgcatgcgtgacttccagcaggtggtccctttgaagg 47

                                                         
Query: 604 ctgggtcatcaggggttcatctttcccaaccccctcttgctctcac 649
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46  ctgggtcatcaggggttcatctttcccaaccccctcttgctctcac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space:   718641
Effective search space used:   718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no515_i20.g1 MSMg01no515_i20.g1 CHROMAT_FILE:
MSMg01no515_i20.g1 PHD_FILE: MSMg01no515_i20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:55 2005
         (616 letters)



>mm_chr1_157223100_157224115
          Length = 1016

 Score = 1185 bits (613), Expect = 0.0
 Identities = 616/617 (99%), Gaps = 1/617 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggatagccagggctacacagagaaaccctgtcttggaaaaccaatacatacatgctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 caggatagccagggctacacagagaaaccctgtcttggaaaaccaatacatacatgctca 259

                                                                       
Query: 61  tgcacacgtacgtattcatgcacacatgcacatgtagtaatatctataaagactttcctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgcacacgtacgtattcatgcacacatgcacatgtagtaatatctataaagactttcctc 319

                                                                       
Query: 121 tgaggtagcctaatctaaaagtttgggtgatggtttgcagttctccaggcctcaccaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgaggtagcctaatctaaaagtttgggtgatggtttgcagttctccaggcctcaccaggc 379

                                                                       
Query: 181 actttgtttagagatcagtgtgatgtgaatgacaagagactgtgtcagttattatagtaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 actttgtttagagatcagtgtgatgtgaatgacaagagactgtgtcagttattatagtaa 439

                                                                       
Query: 241 cctgaacattttttttttt-gagggaaagctaagttagacagagtcttggatgtagcacc 299
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cctgaacattttttttttttgagggaaagctaagttagacagagtcttggatgtagcacc 499

                                                                       
Query: 300 aggctaagtttcaatttaccatagcccaggctggcttcaaatcaggatcttcctgcctcc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aggctaagtttcaatttaccatagcccaggctggcttcaaatcaggatcttcctgcctcc 559

                                                                       
Query: 360 atttctgggccactacatttaagtgtacactgtaatttcattcatttttctgctttagct 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atttctgggccactacatttaagtgtacactgtaatttcattcatttttctgctttagct 619

                                                                       
Query: 420 acacagtacataacgcaagctacattaaaacatgtatgatgatacaggtcacccatagac 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 acacagtacataacgcaagctacattaaaacatgtatgatgatacaggtcacccatagac 679

                                                                       
Query: 480 tccttaatgataaaaaagggcatgacttttagcagggtcttaaagaagtagaagttgctg 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tccttaatgataaaaaagggcatgacttttagcagggtcttaaagaagtagaagttgctg 739

                                                                       
Query: 540 gtagcatttcctgagaaagcacattctataagacagaactaagcatgcatgaatgttaaa 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gtagcatttcctgagaaagcacattctataagacagaactaagcatgcatgaatgttaaa 799

                            
Query: 600 aatgcaaagtaattagt 616
           |||||||||||||||||
Sbjct: 800 aatgcaaagtaattagt 816


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space:   609636
Effective search space used:   609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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