Query= MSMg01no515_j09.b1 MSMg01no515_j09.b1 CHROMAT_FILE:
MSMg01no515_j09.b1 PHD_FILE: MSMg01no515_j09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:57 2005
(667 letters)
>mm_chr1_70600732_70601798
Length = 1067
Score = 1259 bits (651), Expect = 0.0
Identities = 660/663 (99%)
Strand = Plus / Plus
Query: 5 gaattctctttccatatggttgaaaagaaagaatgatactatatatctctcagttgggac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctttccatatggttgaaaagaaagaatgatactatatatctctcagttgggac 264
Query: 65 tgaacacattttagaacattaggagtgtcttctcttaaaatgacattgtgtatactaaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgaacacattttagaacattaggagtgtcttctcttaaaatgacattgtgtatactaaaa 324
Query: 125 ttcatgggttggaaaccaaccatgctgggaggtaggaactaagaagaactaattaaatat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttcatgggttggaaaccaaccatgctgggaggtaggaactaagaagaactaattaaatat 384
Query: 185 gaaggctctattcctggaaatagattgctgtccttattataagatagttttttggacaat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaaggctctattcctggaaatagattgctgtccttattataagatagttttttggacaat 444
Query: 245 ggagttgtgacaaaagcaacttcagtccactatctatcacctgtcattcccttttagctg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggagttgtgacaaaagcaacttcagtccactatctatcacctgtcattcccttttagctg 504
Query: 305 gggatcatgcagtaagaaggtccagcacaatctattgtgtgtctgagccccctgaagtgt 364
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gggatcatgcagtaagaaggcccagcacaatctattgtgtgtctgagccccctgaagtgt 564
Query: 365 gagaaacaaagagatttctttatgttttcagtattaaattatggtggcaaaatagactaa 424
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 565 gagaaacaaagagatttctttatgttttcagtattaagttatggtggcaaaatagactaa 624
Query: 425 gaaaacacttgctttccaactcagagaaagaaattttattatatatcatatataaataaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaaaacacttgctttccaactcagagaaagaaattttattatatatcatatataaataaa 684
Query: 485 gtaaatgtgcttctttttttgttttaggaaatttcagtcaggtgtacagcttgttcagca 544
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtaaatgtgattctttttttgttttaggaaatttcagtcaggtgtacagcttgttcagca 744
Query: 545 gcttctccttattgatcacaggcaagggtgtacttgaaacttatctttattgtctcttct 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gcttctccttattgatcacaggcaagggtgtacttgaaacttatctttattgtctcttct 804
Query: 605 ctgacacagtattttccgttctcacacctagtcctactcatcacctctactcacaatgct 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ctgacacagtattttccgttctcacacctagtcctactcatcacctctactcacaatgct 864
Query: 665 tcg 667
|||
Sbjct: 865 tcg 867
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space: 694449
Effective search space used: 694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no515_j09.g1 MSMg01no515_j09.g1 CHROMAT_FILE:
MSMg01no515_j09.g1 PHD_FILE: MSMg01no515_j09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:58 2005
(618 letters)
>mm_chr1_70772965_70773981
Length = 1017
Score = 1180 bits (610), Expect = 0.0
Identities = 616/618 (99%), Gaps = 1/618 (0%)
Strand = Plus / Minus
Query: 1 ctttggggtaatgataaaggagatagatttcccctaaaatatgtcaaaaataatgagtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 ctttggggtaatgataaaggagatagatttcccctaaaatatgtcaaaaataatgagtca 758
Query: 61 tgacagaacaagaaaatgcaaacctacaattctacttgagaaactggaagctccctttga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 tgacagaacaagaaaatgcaaacctacaattctacttgagaaactggaagctccctttga 698
Query: 121 caaagcatttttattcttctaaattactacagaggccacaaacagaggagaagcttctgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 caaagcatttttattcttctaaattactacagaggccacaaacagaggagaagcttctgg 638
Query: 181 aaaggcatatatatgttttactaattaaagcattgatgcacttctcacatatatagaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 aaaggcatatatatgttttactaattaaagcattgatgcacttctcacatatatagaaag 578
Query: 241 tttatcttgcaaggcaaggaagctaccgtgcctcctcacattgtccagcggcagctatca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tttatcttgcaaggcaaggaagctaccgtgcctcctcacattgtccagcggcagctatca 518
Query: 301 atacatgcaagaaaagccatgtgaaatacagacaggattctgcttttaaaatgacccagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 atacatgcaagaaaagccatgtgaaatacagacaggattctgcttttaaaatgacccagg 458
Query: 361 cagaaaagaatcattttgtaagccacaggtaggcattaatgtgcaaggttacagtaaatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 cagaaaagaatcattttgtaagccacaggtaggcattaatgtgcaaggttacagtaaatg 398
Query: 421 taaactgcaagatagaaagaagggtggggtttttttcttcatattaacattaagcatgct 480
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 397 taaactgcaagatagatagaagggtggggtttttt-cttcatattaacattaagcatgct 339
Query: 481 tttattatgaggaatatgtgaataatgaaacaaagttcttaggctattttcaaaagaacc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tttattatgaggaatatgtgaataatgaaacaaagttcttaggctattttcaaaagaacc 279
Query: 541 ttccttataataaataccatttagaatactatttaaaaatagggaggttagggaaataca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ttccttataataaataccatttagaatactatttaaaaatagggaggttagggaaataca 219
Query: 601 acagcagcattatctgaa 618
||||||||||||||||||
Sbjct: 218 acagcagcattatctgaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1017
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1007
Effective search space: 612256
Effective search space used: 612256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
