BAC Information

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BAC

Clone NameMSMg01-515J19
Chromosome1 (Build37)
Map Location 104,874,043 - 104,979,579
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041056, LOC100041067
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-515J19.T7 (MSMg01no515_j19.b1)MSMg01-515J19.TJ (MSMg01no515_j19.g1)
ACCAG587809AG587810
length742752
length of high quality
(start - end)		693 (50 - 742)544 (85 - 628)
definitionCHROMAT_FILE: MSMg01no515_j19.b1 PHD_FILE: MSMg01no515_j19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:00 2005CHROMAT_FILE: MSMg01no515_j19.g1 PHD_FILE: MSMg01no515_j19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,978,946 - 104,979,579)(104,874,043 - 104,874,586)
sequence
NNNNAAAATTTATAATTGCGGCTGCTATACGACTCCTATTTCGAGAGGAT
CCGCGGAATTCTTAGGATAATGGATGGAACTAGAAAATATCATCCTGAGT
AAGGTAATCTTGCCTCAAAAGAACACAAATAATATGCATTCTCTAATAAG
TGGATATTAGTCTAAAACCTTAGAAAACCCAAGATAAAATTCACAGACCA
TATGAAGCTCAATAAGAATGAAGAGCAAAGTCCGGATGCTTCATCCTTCT
TAGAAGGTGGAACAAAATGGTCATGGGAGGAAATACAGAGACAAAATATG
TAGCACACTCTGTCTGCAAATACTTTATCTACTAGTTCATCTGTTTAGGC
TGTACTGTTCTATTCTACCATAAGCATAGACCCTCTTTGTAACACCCCTA
TTACCCACAGTGACTTGAACTTGGGGCACAGTGCAGCCAGGCAAGCTCTT
TATAGAGAGGTATTTTCTGAACCTCTTTGTTTTTCATTTATATTGATTCT
CATTATCATATTTATCCAACTTCCCATGCATATTGTGATTATTTATTTAT
GCATAAAAAGGCTAGGATGTGAGATACCCTGGAAATTCATCCTGCAATCC
CTTCCTGGTTCACACAGAGGACAACACTGTCATTTCATGCAAATTAGTTA
TCAACATACTTCATGTGGACTTCACCTGCATGCTCTCTGTGCTTTCCTCA
CAGGGTACTTCACATTTCATGGGAAGTAAATACTTGCACAGA

NNNGGGTCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACGTTAATTCGAGAA
ATTCATTAAAAATTGTCCTCCCACATAATCACTCTATCCAGGGGTACCCT
CTACATACATTTCTTTGTCCAGAGATACTGCTAACTTTAATAATGTACAG
AGAAATACATATGCATGATTCTTATTGGATCAATTATTTCCCCATGGTAC
TACTGAACCATAAGTAACAAAATTAATGTGATGATTTGACATGTGTATAC
ATTATAAAATGCTTATAAGCAAGTTAGGTGACACAGCCTTCTCTTGCCAG
TTATTTATTTATTTACTTACTTATTTATTTATTTTAGATGAATGTTTAGC
TTCTTTTTTAATTAGATACTTTCTTTATTTACATTTCAAATGCTATCCCG
AAAGTTCCCTATACCCTCCCCCCACCCTGTTCCCCTACCCAGACACTCTC
ACTTCTTGGCCATGGCGTTCTCCTGTACTGTAATATATAAATTTTACAAC
ACCAAGGGGCTTCTCTTTCCAGTGATGGCCAAATAGGCCATCTTCTGCTA
CATATGCAGCTAGAGACATGAGCTCTGGGGATACTGGTTAGTTCATATTA
TTGTTCAACCTATAGGGTTGCAAACCCATTCAGCTCCCTGGGGTGCTTTC
TCTAACTTCTCCATTGGGGGACCCTATGTTTCATCCAATAGAAGACTGTG
AG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no515_j19.b1 MSMg01no515_j19.b1 CHROMAT_FILE:
MSMg01no515_j19.b1 PHD_FILE: MSMg01no515_j19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:00 2005
         (693 letters)



>mm_chr1_104978487_104979579
          Length = 1093

 Score = 1118 bits (578), Expect = 0.0
 Identities = 620/634 (97%)
 Strand = Plus / Minus

                                                                        
Query: 60   cttgcctcaaaagaacacaaataatatgcattctctaataagtggatattagtctaaaac 119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1093 cttgcctcaaaagaacacaaataatatgcattctctaataagtggatattagtctaaaac 1034

                                                                        
Query: 120  cttagaaaacccaagataaaattcacagaccatatgaagctcaataagaatgaagagcaa 179
            |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1033 cttagaaaacccaagatacaattcacagaccatatgaagctcaataagaatgaagagcga 974

                                                                        
Query: 180  agtccggatgcttcatccttcttagaaggtggaacaaaatggtcatgggaggaaatacag 239
            |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 973  agtccgaatgcttcatccttcttagaaggtggaacaaaatggtcatgagaggaaatacag 914

                                                                        
Query: 240  agacaaaatatgtagcacactctgtctgcaaatactttatctactagttcatctgtttag 299
            |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 913  agacaaaatatggagcacaatctgtctgcaaatactttatctactagttcatctgtttag 854

                                                                        
Query: 300  gctgtactgttctattctaccataagcatagaccctctttgtaacacccctattacccac 359
            |||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||
Sbjct: 853  gctgtactgttctattctaccataagcataaacgctctttgtagcacccctattacccac 794

                                                                        
Query: 360  agtgacttgaacttggggcacagtgcagccaggcaagctctttatagagaggtattttct 419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793  agtgacttgaacttggggcacagtgcagccaggcaagctctttatagagaggtattttct 734

                                                                        
Query: 420  gaacctctttgtttttcatttatattgattctcattatcatatttatccaacttcccatg 479
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 733  gaacctctttgtttttcatttatattaattctcattatcatatttatccaacttcccatg 674

                                                                        
Query: 480  catattgtgattatttatttatgcataaaaaggctaggatgtgagataccctggaaattc 539
            ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 673  catattgtgattatttacttatgcataaaaaggctagtatgtgagataccctggaaattc 614

                                                                        
Query: 540  atcctgcaatcccttcctggttcacacagaggacaacactgtcatttcatgcaaattagt 599
            |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 613  atcctgcaatcccttcctggttcacacaaaggaaaacactgtcatttcatgcaaattagt 554

                                                                        
Query: 600  tatcaacatacttcatgtggacttcacctgcatgctctctgtgctttcctcacagggtac 659
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553  tatcaacatacttcatgtggacttcacctgcatgctctctgtgctttcctcacagggtac 494

                                              
Query: 660  ttcacatttcatgggaagtaaatacttgcacaga 693
            ||||||||||||||||||||||||||||||||||
Sbjct: 493  ttcacatttcatgggaagtaaatacttgcacaga 460


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space:   739689
Effective search space used:   739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no515_j19.g1 MSMg01no515_j19.g1 CHROMAT_FILE:
MSMg01no515_j19.g1 PHD_FILE: MSMg01no515_j19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:00 2005
         (544 letters)



>mm_chr1_104873843_104874786
          Length = 944

 Score = 1006 bits (520), Expect = 0.0
 Identities = 538/544 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacgttaattcgagaaattcattaaaaattgtcctcccacataatcactctatccagggg 60
           |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacgttcattcaagaaattcattaaaaattgtcctcccacataatcactctatccagggg 260

                                                                       
Query: 61  taccctctacatacatttctttgtccagagatactgctaactttaataatgtacagagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taccctctacatacatttctttgtccagagatactgctaactttaataatgtacagagaa 320

                                                                       
Query: 121 atacatatgcatgattcttattggatcaattatttccccatggtactactgaaccataag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atacatatgcatgattcttattggatcaattatttccccatggtactactgaaccataag 380

                                                                       
Query: 181 taacaaaattaatgtgatgatttgacatgtgtatacattataaaatgcttataagcaagt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 taacaaaattaatgtgatgatttgacatgtgtatacattataaaatgcttataatcaagt 440

                                                                       
Query: 241 taggtgacacagccttctcttgccagttatttatttatttacttacttatttatttattt 300
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 taggtgacacagccttctcttaccagttatttatttatttacttacttatttattcattt 500

                                                                       
Query: 301 tagatgaatgtttagcttcttttttaattagatactttctttatttacatttcaaatgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagatgaatgtttagcttcttttttaattagatactttctttatttacatttcaaatgct 560

                                                                       
Query: 361 atcccgaaagttccctataccctccccccaccctgttcccctacccagacactctcactt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcccgaaagttccctataccctccccccaccctgttcccctacccagacactctcactt 620

                                                                       
Query: 421 cttggccatggcgttctcctgtactgtaatatataaattttacaacaccaaggggcttct 480
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 621 cttggccatggcgttctcctgtactggaatatataaattttacaacaccaaggggcttct 680

                                                                       
Query: 481 ctttccagtgatggccaaataggccatcttctgctacatatgcagctagagacatgagct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctttccagtgatggccaaataggccatcttctgctacatatgcagctagagacatgagct 740

               
Query: 541 ctgg 544
           ||||
Sbjct: 741 ctgg 744


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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