NTGGGGGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTCTCCATTTCTCGTAGAATTGAAAGATGGTACAATAA
CTCTTGAAATCATTTTGGTGATTCCTCAGAAAACTGAATGTATTACTACC
TGAGGACCCAGCTCTACCACTCCTGGGCATATACCCAAATGATGCTTCAA
GACATAAGAATTATACATATTCTACTGTGTTCATATCAGCCTTATTTATA
ATAACCAGAAGCTGAAATCAACCCAGATGTTCCTAAACAAAGGAATGGGT
ACAAAAAATGTGATATATTTACACAATGAAGTACTGTTTAACAATTAAAA
ACAATAAGCTCATAAAATTCACAGGCAAATGCATTTAAAAAATATCATCC
TGAGTGAGGTAATCCAGCCACAAAACAATACACCTGGTATATATTAACTG
AAAAGTGGATATTAACCAAAAACGCTTGGTGGTTCATACTTAAATTGAGT
AATAGTGGACCCCTACAGCACCTTTCTGAAATAGCTGCTTGTCTTTCCAC
CTTTCTGGGTATGTAAAAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGNGTGTNNNTNNTNTNTTTTTTTTTTTTTTTTTTGTTTT
GTTTTTTTTTTGTTTTTTGTGTTTTTGGTTTTTTTTTTTTTTTTTTTGTG
TGTGGTGTTTTGTGTTTTTTTTTTTGTTTTTTTGTTATTTCTTTT

NNAATGACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGAGAAATTGATGTG
GTTAAAGGTAGAATACAAACTACCTCCCAGACATATATTTACACTAACAA
GGATATGAAATTGTCTGCACCCTCTAACTTGTCGTCTTACAAATTAAACC
ATTGCCTAATAAGATAACATAGAGTTAGGTCTTTAATTTTTTTCTCTACC
TTTTTTTCCTTTTCCCCTTTTGTCCTTCTATTTTATTTATTTTTTAATTG
ATTTACTCTAATGATTTAGGAGATCTTTATGTCAGATTTTAATACAAACA
CAGCTCTTACCTCAAAGGGATTGAGATCATTTATTTTGAGTGGAATATGA
GAGACTTCAGCTTATGTGGATTCAGGTTATCCAAAATCTCATGTTCCAAT
ATGGAAGTTTATACATAATTTTATAGGCATAGAAATAAAACAAATTTATA
ACTCAAGTCATTTTTAATATTATGATGAAAACATCAATTATGTTAGTGAT
AGTAAACTGTAGAAAACTCTAGGTTTAAGATACTATCTGATAATAATCTT
AATTTCTCGGTTGATGAAATCTAGTGGTATCTTTTTTTTGTTTGTTTGTT
TGTTTTTGTTTTTTGTTTTTTTGTTTTTTCAGACAGGATTTCTCTGTGTA
GCCCTGGCTGTCCTGAACCTCACTCTGTAGACCAGGCTGGTCTCAAACTC

Query= MSMg01no515_k07.g1 MSMg01no515_k07.g1 CHROMAT_FILE:
MSMg01no515_k07.g1 PHD_FILE: MSMg01no515_k07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:03 2005
         (645 letters)



>mm_chr1_103087334_103088379
          Length = 1046

 Score = 1110 bits (574), Expect = 0.0
 Identities = 628/648 (96%), Gaps = 8/648 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgagaaattgatgtggttaaaggtagaatacaaactacctcccagacatatatttaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgagaaattgatgtggttaaaggtagaatacaaactacctcccagacatatatttaca 260

                                                                       
Query: 61  ctaacaaggatatgaaattgtctgcaccctctaacttgtcgtcttacaaattaaaccatt 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 ctaacaaggatatgaaattgtctgcaccctctaacttgtcatcttacaaattaaaccatt 320

                                                                       
Query: 121 gcctaataagataacatagagttaggtctttaatttttttctctacctttttttcctt-t 179
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
Sbjct: 321 gcctaataagataacatagagttaggtctttagtttttttctctacctttttttccctct 380

                                                                       
Query: 180 tccccttttgtccttctattttatttattttttaattgatttactctaatgatttaggag 239
           |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 tccccttttgtctttctattttatttattttttaattgttttactctaatgatttaggag 440

                                                                       
Query: 240 atctttatgtcagattttaatacaaacacagctcttacctcaaagggattgagatcattt 299
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 atctttatgtcagatcttaatacaaacacagctcttacctcaaagggattgagataattt 500

                                                                       
Query: 300 attttgagtggaatatgagagacttcagcttatgtggattcaggttatccaaaa-tctca 358
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 attttgagtggaatatgagtgacttcagcttatgtggattcaggttatccaaaaatctca 560

                                                                       
Query: 359 tgttccaatatggaagtttatacataattttataggcatagaaataaaacaaatttataa 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgttccaatatggaagtttatacataattttataggcatagaaataaaacaaatttataa 620

                                                                       
Query: 419 ctcaagtcatttttaatattatgatgaaaacatcaattatgttagtgatagtaaactgta 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcaagtcatttttaatattatgatgaaaacatcaattatgttagtgatagtaaactgta 680

                                                                       
Query: 479 gaaaactctaggtttaagatactatctgataataatcttaatttctcggttgatgaaatc 538
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 681 gaaaactctaggtttaagatactatctgataataatcttaacttctcggttgatgaaatc 740

                                                                       
Query: 539 tagtggtatctttttt-ttgtttgtttgtttgtttttgttttttgtttttttgttttttc 597
           |||||||||||||||| || ||||||| |||||||||    ||| |||||||||||||| 
Sbjct: 741 tagtggtatcttttttgttttttgttt-tttgttttt----tttctttttttgttttttg 795

                                                           
Query: 598 agacaggatttctctgtgtagccctggctgtcctgaacctcactctgt 645
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 agacaggatttctctgtgtagccctggctgtcctgaacctcactctgt 843


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1046
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1036
Effective search space:   657860
Effective search space used:   657860
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)