Query= MSMg01no516_f06.b1 MSMg01no516_f06.b1 CHROMAT_FILE:
MSMg01no516_f06.b1 PHD_FILE: MSMg01no516_f06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:00 2005
(462 letters)
>mm_chr1_42450765_42451626
Length = 862
Score = 853 bits (441), Expect = 0.0
Identities = 456/463 (98%), Gaps = 4/463 (0%)
Strand = Plus / Plus
Query: 4 ggaattcaataggtagacgaggttggcctcaaactagaaatccaccagtctctaaagaag 63
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 200 ggaattcaataggtagacgaggttgccctcaaactagaaatccaccagtctctaaagaag 259
Query: 64 agatattatttc----tttgtttgtttgtttgtttgttttagaagaacaggaatccacag 119
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agatattatttctttgtttgtttgtttgtttgtttgttttagaagaacaggaatccacag 319
Query: 120 ccattcataaaagaacaaactagatttgttgagaagcagaccaccaactgcaaggacaat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ccattcataaaagaacaaactagatttgttgagaagcagaccaccaactgcaaggacaat 379
Query: 180 aggtggctcattgctgaccatttccaactccagtcatcccatatctgatgggcattctag 239
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 380 aggtggctcattgctgaccatttccaactccggtcatcccatatctgatgggcattctag 439
Query: 240 cctttctgtgcctgtgaggccgagccaaagtgaccccttgtgagcgcccgactcaccagc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cctttctgtgcctgtgaggccgagccaaagtgaccccttgtgagcgcccgactcaccagc 499
Query: 300 aagaacaacgccacaataggatccttctgcacatgtttattgggagagctcaattacagt 359
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aagaacaacaccacaataggatccttctgcacatgtttattgggagagctcaattacagt 559
Query: 360 ggcgaaaagaccccgagccaagaaatggtgctgcttatgtaggcctaggagtgacgtgtc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggcgaaaagaccccgagccaagaaatggtgctgcttatgtaggcctaggagtgacgtgtc 619
Query: 420 catacctgattggttatgctaccagtacctcattaatatgcgt 462
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 catacctgattggttatgctaccagtacctcattaatatgcgt 662
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space: 385104
Effective search space used: 385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_f06.g1 MSMg01no516_f06.g1 CHROMAT_FILE:
MSMg01no516_f06.g1 PHD_FILE: MSMg01no516_f06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:00 2005
(670 letters)
>mm_chr1_42521921_42522990
Length = 1070
Score = 1168 bits (604), Expect = 0.0
Identities = 625/642 (97%), Gaps = 17/642 (2%)
Strand = Plus / Minus
Query: 1 agaactgttcctatccagacaataataatcaagcggtagtttgcaattaaagggatagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 agaactgttcctatccagacaataataatcaagcggtagtttgcaattaaagggatagag 567
Query: 61 ggtgttgtctgtcatttgagtgcctgggtatcagttgagggagagaagtattcaccacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ggtgttgtctgtcatttgagtgcctgggtatcagttgagggagagaagtattcaccacaa 507
Query: 121 agtgtttgtagactcacatgcaagactcaaggacagacagtgtcccgcataaattcctga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 agtgtttgtagactcacatgcaagactcaaggacagacagtgtcccgcataaattcctga 447
Query: 181 aactgggatgtggaaagtgtctcatgagctctgtttgtaaccaggaaagagaaaaccata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aactgggatgtggaaagtgtctcatgagctctgtttgtaaccaggaaagagaaaaccata 387
Query: 241 tccaagataagatgcaaatatctgggattgcagaaatgtctgacaccagactaaaccttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tccaagataagatgcaaatatctgggattgcagaaatgtctgacaccagactaaaccttt 327
Query: 301 tagtttgtctcttgactaaatttagagaaaaatggcattcactgttaagaataagttcac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tagtttgtctcttgactaaatttagagaaaaatggcattcactgttaagaataagttcac 267
Query: 361 ataagtataggatcagtgtttttgtgggttttgtgcttgtttaaaccttcattttaagaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ataagtataggatcagtgtttttgtgggttttgtgcttgtttaaaccttcattttaagaa 207
Query: 421 agtta-tttttttgttaggttaatataattacattcttttccttttcccattttccctca 479
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 agttattttttttgttaggttaatataattacattcttttccttttcccattttccctca 147
Query: 480 cacccctccttgttctctttcaaatccatgctctcattttattcacatattgctgttaca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 cacccctccttgttctctttcaaatccatgctctcattttattcacatattgctgttaca 87
Query: 540 tacttacacacacacacacacacacacacacacacacacacacacacacacacacacaca 599
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 tacttacacacacacacacacacacacacacacacacacacacacac------------- 40
Query: 600 catactcagtttctaactatgaaaatccaagccccgcattct 641
|||||||||||||||||||||||||||||||||||||||
Sbjct: 39 ---actcagtttctaactatgaaaatccaagccccgcattct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 81
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
