NNNNTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATTGTTTTTAATAGATGAGTAGTCCTCCATTGTGTAAAT
GTACCATGTTTTCTATATCTATTCCTGTGTTGAGGGACATCTGGGTTCTT
TCCAGCTTCTGGCTATTTTAAATAAGGCTGCTATGAACATAGTGGAACAT
GTGACCATTCAGAGAGTGCCCCACCTGGGGATCCATCCCATAAACAACCA
CCAAACCCAGAAAATATTGCATATGCCAGAAAGATTTTGCTGACAGGACC
CTGATGTAGCTGTCTCTTGTGAGGCTATGCCAGTGCTTGACAAATACAGA
AGTGGATGCTCACAGTCATCTATTGGATGGAACACATGGACCCCAATGAA
GGAGCTAGAGAAAGTAGCCAAGGAGCTAAAAGGGTCTGCAACACTATAGG
AGGAACAACAATCTGAACTAACCAGTAACCACCCCCCCCGCCCCTAGAGC
TTGTCTCTCTAGTTGCATATGTAGCAACTAGTCGGCCATCAATGGGAGGA
GAGGCCCTTGGTCTTGTGAAGATCATATCCCCCAGTACAGGGGAATGCCA
GGGCCAGGAAGCAGGAGTGAGTGGGTTGGGAAGCAGGGCAGGGAAAGATA
TAGGGGACTTTCAGGACAGCATTTGAAATATNAATGAAGAAAATATCTAA
TAAAAAAGAAAGAAAGTAAAATAAAAAAAAAAAACAAGTGTGTGATTATC
ACATAN

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTTTAATCATACTTGCTT
TGTTATGCTGCTAACAAAAATAAAAAGAAACTTACCACAAGTATATTGAT
TTCTTAGGTTAGAACTACATTGTGAAATGTTAAAAATTTGAATATTTTTC
CTTTACCTCCTAATATTTCTATAAACTTCCATAATAATTGTTTTATGAGT
ATTATTAAACATACATAATTATTTTTCATATAACTTACTTATAATATACA
TATATGAATGCTCTTTCTGGGGATATGTTAAACATCATTAGTTTTTTTAA
TAACATTAAATTACCATAGGAAAGCAGTTAAATCAGAAGTTGGTTTATAT
AGCTCTCCTACACAAAATAGAAAAAATGTAACATAAAAAAATAAATGAAT
TCATGTAAGAAAGGTAAACAAAAAAATAAGTACTTCTATGGAATTTGGTG
TATGTATGAAAATGTATTCATTACATTGCTATAAAAGAACTATTTTAAAA
AGTATCTTAATATGTGACAAGGATTGACCTTTAAATGTACTTAATTTATG
ACTTTCTTTTTTCATCGCTGGATGGCTTCTACTCTTTTTACACTCATCCA
AAAGTAGTCCTGGAACAAAGCCCAGCCACAGCCGCCAAATTTGAAATATT
ATCTCTAAAAATGGAATTCTAGTANGAGGAATACGTTTGATGAATGAAAG
ACAGTCACAGT

Query= MSMg01no516_j01.g1 MSMg01no516_j01.g1 CHROMAT_FILE:
MSMg01no516_j01.g1 PHD_FILE: MSMg01no516_j01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:21 2005
         (644 letters)



>mm_chr1_143325622_143326666
          Length = 1045

 Score = 1174 bits (607), Expect = 0.0
 Identities = 637/647 (98%), Gaps = 5/647 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctttaatcatacttgctttgttatgctgctaacaaaaataaaaagaaacttaccacaa 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 ttctttaatcatacttgctttgttatgttgctaacaaaaataaaaagaaacttaccacaa 260

                                                                       
Query: 61  gtatattgatttcttaggttagaactacattgtgaaatgttaaaaatttgaatatttttc 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaatattgatttcttaggttagaactacattgtgaaatgttaaaaatttgaatatttttc 320

                                                                       
Query: 121 ctttacctcctaatatttctataaacttccataataattgttttatgagtattattaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttacctcctaatatttctataaacttccataataattgttttatgagtattattaaac 380

                                                                       
Query: 181 atacataattatttttcatataacttacttataatatacatatatgaatgctctttctgg 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 atacataattatttttcatataacttacttaaaatatacatatatgaatgctctttctgg 440

                                                                       
Query: 241 ggatatgttaaacatcattagtttttttaataacattaaattaccataggaaagcagtta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggatatgttaaacatcattagtttttttaataacattaaattaccataggaaagcagtta 500

                                                                       
Query: 301 aatcagaagttggtttatatagctctcctacacaaaatagaaaaaatgtaacataaaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatcagaagttggtttatatagctctcctacacaaaatagaaaaaatgtaacataaaaaa 560

                                                                       
Query: 361 ataaatgaattcatgtaagaaaggtaaacaaaaaaa-taagtacttctatggaatttggt 419
            ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 561 -taaatgaattcatgtaagaaaggtaaacaaaaaaaataagtacttctatgtaatttggt 619

                                                                       
Query: 420 gtatgtatgaaaatgtattcattacatt-gctataaaagaactattttaaaaagtatctt 478
           |||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||
Sbjct: 620 gtatgtatgaaaatgtattcatta-atttgctataaaagaactactttaaaaagtatctt 678

                                                                       
Query: 479 aatatgtgacaagga-ttgacctttaaatgtacttaatttatgactttcttttttcatcg 537
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aatatgtgacaaggaattgacctttaaatgtacttaatttatgactttcttttttcatcg 738

                                                                       
Query: 538 ctggatggcttctactctttttacactcatccaaaagtagtcctggaacaaagcccagcc 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ctggatggcttctactctttttacactcatccaaaagtagtcctggaacaaagcccagcc 798

                                                          
Query: 598 acagccgccaaatttgaaatattatctctaaaaatggaattctagta 644
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 acagccgccaaatttgaaatattatctctaaaaatggaattctagta 845


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1045
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1035
Effective search space:   656190
Effective search space used:   656190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)