BAC Information

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BAC

Clone NameMSMg01-516L14
Chromosome1 (Build37)
Map Location 61,962,713 - 62,124,444
singlet/doubletdoublet
Overlap genePard3b
Upstream geneCtla4, LOC100043049, Icos, LOC433313, LOC100042566
Downstream geneLOC667592, Nrp2, LOC100043070, A430093A21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516L14.T7 (MSMg01no516_l14.b1)MSMg01-516L14.TJ (MSMg01no516_l14.g1)
ACCAG588652AG588653
length748734
length of high quality
(start - end)		694 (55 - 748)652 (83 - 734)
definitionCHROMAT_FILE: MSMg01no516_l14.b1 PHD_FILE: MSMg01no516_l14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:34 2005CHROMAT_FILE: MSMg01no516_l14.g1 PHD_FILE: MSMg01no516_l14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,124,046 - 62,124,444)(61,962,713 - 61,963,364)
sequence
CTTTTTTACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCCAGGAGCTGCAGTTCCCAATGAGAGTCCTCTACAA
GAAAATAGGTGCTCTTCAACACGATGCCTAATCTTGAGCTAAAGAAAGAA
TACACCAAGAGCCATGCATGTGGAAAGAGTATGAGGGGGGGAGCATGAGG
CCTCAACCCTACAGAAAGAACTCTAGTCAACCAAAGAATGTTGAAAGCAG
CAGAAACAGTCTTTCCCAGTGAAGAGCACAATGATTGGCTATTTAAACCG
AATGCTCAGCTCTGGAAACATACCCATATATAGGAGTAACATTATATAAA
CTGAATAGGCTATATTTGGATATATATGTAAATATACATGTATATGTATG
TACATGCATATAACAACAATTATTTTTTAAAAACAATTAATTTTTAAAAG
GTGACCATGAATTTGGAGGAGAATGAAGAAAGGCATATGAGAGGTTTGGA
GGGAGGAAAGGAAAAGAAAAAGATGCAATTATAATATAAAAAATTAAAAG
AAATAATGAAACATACATATTTAAAAGAGAAGGCTTTCTCAAGGACTAAG
TCATCTCTCCAGCACCTAGAGCTTTAAATAGGATAATGAGAGAACAGTAT
ATCTAAACTGTTTTAAAGGCACTACTTTAAGGAAAATAATTACACCAATT
GGGAAAATACCCATCAACTGGTAAATACTCAATAATACAGCATAGCAG

NNNTTTCTATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATACACTTTCCTAGCCT
ATTAAGAATCTGTAAGTGATCAGTACTTATACTTAAAATTATTCCTCTGA
AAATATGAACCATAGTTCCTAGTAACTGATCTGTAAATTATTCACAGCTT
TGAGAAAAGCTTTTGGCTATACGTCTAGAAAGGTATAGCTCACAGGAATA
GGCATATAGACATTCATAGAATTTGTAGTTCCTTGAAGACAAGGTTTTAG
CACGTAACCCAAGAAGAATAATCCTTTATCAGCCACTAGCTTTTCCCATG
TGCACAGCTTTTCAAATTAAGCAAAACCTTTTCATATCAGGTCTACTAAA
AGTGCAAAACTCAATTTTATGAAAATTGAAGCCAAACATGGTTTTATTAT
TCTAAGTCTTGTCACTCCCCACTGTATACAGCACCAAATAAATATTAAGT
CGAAGATTCCAACTTGTGTTGTCACCTGCTTTTTGATTTTCCATGGGTTC
TTCCTTTCATCTTGATAGTGTTTCATTGTGGGAATTATCTGATAGCAAAT
GGTTTGCTGTTCTCTTGCTATGCCTGTATTTCCCATATCCGGCGATCACT
TTCAACTTCTGACTTGGCTTCTGCATGTAGCATTGGACCCTCCATCCTTC
CTTCTCTGCCCCAAGCCTTGACACGAATCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_l14.b1 MSMg01no516_l14.b1 CHROMAT_FILE:
MSMg01no516_l14.b1 PHD_FILE: MSMg01no516_l14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:34 2005
         (694 letters)



>mm_chr1_62123351_62124444
          Length = 1094

 Score =  756 bits (391), Expect = 0.0
 Identities = 397/399 (99%)
 Strand = Plus / Minus

                                                                        
Query: 296  actgaataggctatatttggatatatatgtaaatatacatgtatatgtatgtacatgcat 355
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1094 actgaataggctatatttggatatatatgtaaatatacatgtatatgtatgtacatgcat 1035

                                                                        
Query: 356  ataacaacaattattttttaaaaacaattaatttttaaaaggtgaccatgaatttggagg 415
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1034 ataacaacaattattttttaaaaacaattaatttttaaaaggtgaccatgaatttggagg 975

                                                                        
Query: 416  agaatgaagaaaggcatatgagaggtttggagggaggaaaggaaaagaaaaagatgcaat 475
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974  agaatgaagaaaggcatatgagaggtttggagggaggaaaggaaaagaaaaagatgcaat 915

                                                                        
Query: 476  tataatataaaaaattaaaagaaataatgaaacatacatatttaaaagagaaggctttct 535
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914  tataatataaaaaattaaaagaaataatgaaacatacatatttaaaagagaaggctttct 855

                                                                        
Query: 536  caaggactaagtcatctctccagcacctagagctttaaataggataatgagagaacagta 595
            ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 854  caaggactaagtcatctctctggcacctagagctttaaataggataatgagagaacagta 795

                                                                        
Query: 596  tatctaaactgttttaaaggcactactttaaggaaaataattacaccaattgggaaaata 655
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794  tatctaaactgttttaaaggcactactttaaggaaaataattacaccaattgggaaaata 735

                                                   
Query: 656  cccatcaactggtaaatactcaataatacagcatagcag 694
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 734  cccatcaactggtaaatactcaataatacagcatagcag 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space:   741456
Effective search space used:   741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no516_l14.g1 MSMg01no516_l14.g1 CHROMAT_FILE:
MSMg01no516_l14.g1 PHD_FILE: MSMg01no516_l14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:34 2005
         (652 letters)



>mm_chr1_61962513_61963564
          Length = 1052

 Score = 1214 bits (628), Expect = 0.0
 Identities = 646/652 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatacactttcctagcctattaagaatctgtaagtgatcagtacttatacttaaaattat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatacactttcctagcctattaagaatctgtaagtgatcagtacttatacttaaaattat 260

                                                                       
Query: 61  tcctctgaaaatatgaaccatagttcctagtaactgatctgtaaattattcacagctttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctctgaaaatatgaaccatagttcctagtaactgatctgtaaattattcacagctttg 320

                                                                       
Query: 121 agaaaagcttttggctatacgtctagaaaggtatagctcacaggaataggcatatagaca 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaaagcttttggctatacatctagaaaggtatagctcacaggaataggcatatagaca 380

                                                                       
Query: 181 ttcatagaatttgtagttccttgaagacaaggttttagcacgtaacccaagaagaataat 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 ttcatagaatttgtagttccttgaagacaaggttttagcatgtaacccaagaagaataat 440

                                                                       
Query: 241 cctttatcagccactagcttttcccatgtgcacagcttttcaaattaagcaaaacctttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctttatcagccactagcttttcccatgtgcacagcttttcaaattaagcaaaacctttt 500

                                                                       
Query: 301 catatcaggtctactaaaagtgcaaaactcaattttatgaaaattgaagccaaacatggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catatcaggtctactaaaagtgcaaaactcaattttatgaaaattgaagccaaacatggt 560

                                                                       
Query: 361 tttattattctaagtcttgtcactccccactgtatacagcaccaaataaatattaagtcg 420
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 tttattattctaagtcttgtcactccccactgtttacagcaccaaataaatattaagtcg 620

                                                                       
Query: 421 aagattccaacttgtgttgtcacctgctttttgattttccatgggttcttcctttcatct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagattccaacttgtgttgtcacctgctttttgattttccatgggttcttcctttcatct 680

                                                                       
Query: 481 tgatagtgtttcattgtgggaattatctgatagcaaatggtttgctgttctcttgctatg 540
           ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 681 tgaaagtgtttcattgtgggaattatctgatagcaaatggtttgttgttctcttgctatg 740

                                                                       
Query: 541 cctgtatttcccatatccggcgatcactttcaacttctgacttggcttctgcatgtagca 600
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cctgtatttcccatatctggcgatcactttcaacttctgacttggcttctgcatgtagca 800

                                                               
Query: 601 ttggaccctccatccttccttctctgccccaagccttgacacgaatcttttg 652
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttggaccctccatccttccttctctgccccaagccttgacacgaatcttttg 852


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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