BAC Information

Click to search

BAC

Clone NameMSMg01-516O22
Chromosome1 (Build37)
Map Location 87,933,321 - 87,933,659
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110, Sp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3
Downstream gene2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik, EG620213
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516O22.T7 (MSMg01no516_o22.b1)MSMg01-516O22.TJ (MSMg01no516_o22.g1)
ACCAG588809AG588810
length778784
length of high quality
(start - end)		555 (52 - 606)347 (79 - 425)
definitionCHROMAT_FILE: MSMg01no516_o22.b1 PHD_FILE: MSMg01no516_o22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:51 2005CHROMAT_FILE: MSMg01no516_o22.g1 PHD_FILE: MSMg01no516_o22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGCTGCTGTGTGTAAAGAGGCACTGGTCACTGTGGAGAG
AAGCCACAAGGCTGAGAGACAACCCTGGGTTCTTGTGGGAAATAACACAT
TGTTGCTTTAAGTTGCTAGGTTGCTGGGGGTGACTTTTTATTGATTGGTT
GGTTGGTTGGTTGATTGGTTGGTTATTTGGGACTCTCACATTGAGCATGA
TCCATCCCCCTACCCATCACGTATGGCCTGGTTCAGTCTGGACCCTTCCA
GATGTCTCTGGCTTATGCACTCCTTCATATCTACAAATATACTCTTCCTC
AACTATACTTAGGGGCTGTCATGTCCTCATCTTTTTTCATTCATTTGGGA
TGGTCTTCCAGGATTATTCTCAACTGAGGATCCAGGGTTTTGTTTTGTTT
GTTTTGTTTCGTTTCGCTTCGCTTCGTTTTGTTTTGTTTTGTTTTTAGCC
GTAAATGTGCTTCTTGTTCTTCAACCTACCTTGCCTTTTGGGAAGTGGTA
TGATCTTGGGTGAGGCAGCTTTCTTTAGTTAAGACAATGCACAGACAGAG
GTATAGATGTTAAGTGGCTAGCAGTGACTATACCAGCATCCTGGAGAGCC
AGCTCATCCATGGGCAGCATACTACAGTATCCATCCTAGTCATATTTCAA
CATACTTCTGGGCTTTTCTATTGCTTGAATACCGGAAGGGCAATATACTT
GATTGCTAAACAAAACTCTATTAAAGAT

NNAACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTAGAGGCTAGAAAAAAAAT
CCCAGTAGCTGACGGGTGGCCTATACAGCTACAAAATGAGATTGACATGG
GATTCCCTTTGACTTGCCCCGGTTGGGACTACAACATGGTTAAAGGTAGG
GAGAGCTTGAAATCCTATCACCAGGCTCTGGTCTCCGAGGCGCCTCAAAA
CAGCCCACTAATTTGGCTAAGGTAAGAGAAGGTGTATTACAAGAGGGAGA
CAGTTACGTGATCTAGTAAAAGAGGCAGAGAAGGTGTAATGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCGGTAGGC
AGAAGGTGGGAGGCAGAAAAGAGACACACACGCGGAAGGCAGAAGAAAGA
AAAAATAGGAGGGATCGTAGACAAGAAAGAAACTTGACTAGAATTTTGAC
CACAGTGGTAGGAGAGAAAGAAAAGACAGGACCTAGACAGACAGGGAACC
TGGGCAACAGAAGACCAATGTGCTTAACAGAATAAGGTGAGTTGGGGTAC
CGCGAGCCTCAGCTAAAAAGGCTCAGCTATGTCAAACTGAAGTTACTTAT
TTGGGATACACCCTTTGAGACAGGAAGCGGTGGCTAATGGAAGCCAGGAA
AAAGACTGTAACTCAGATCCCCACCCCAACTACACCAAGGCAAATTAGAA
GATTCTTTNACACCGCTGGCTTCTGCANGCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_o22.b1 MSMg01no516_o22.b1 CHROMAT_FILE:
MSMg01no516_o22.b1 PHD_FILE: MSMg01no516_o22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:51 2005
         (555 letters)



>mm_chr1_87933321_87934275
          Length = 955

 Score =  640 bits (331), Expect = 0.0
 Identities = 337/339 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagctgctgtgtgtaaagaggcactggtcactgtggagagaagccacaaggctg 63
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 339 ggaattcagctgctgtgtgtaaagaggcgctggtcactgtggagagaagccacaaggctg 280

                                                                       
Query: 64  agagacaaccctgggttcttgtgggaaataacacattgttgctttaagttgctaggttgc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 agagacaaccctgggttcttgtgggaaataacacattgttgctttaagttgctaggttgc 220

                                                                       
Query: 124 tgggggtgactttttattgattggttggttggttggttgattggttggttatttgggact 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 tgggggtgactttttattgattggttggttggttggttgattggttggttatttgggact 160

                                                                       
Query: 184 ctcacattgagcatgatccatccccctacccatcacgtatggcctggttcagtctggacc 243
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 159 ctcacattgagcatgatccatccccctacccatcatgtatggcctggttcagtctggacc 100

                                                                       
Query: 244 cttccagatgtctctggcttatgcactccttcatatctacaaatatactcttcctcaact 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99  cttccagatgtctctggcttatgcactccttcatatctacaaatatactcttcctcaact 40

                                                  
Query: 304 atacttaggggctgtcatgtcctcatcttttttcattca 342
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 39  atacttaggggctgtcatgtcctcatcttttttcattca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |