Query= MSMg01no517_a11.b1 MSMg01no517_a11.b1 CHROMAT_FILE:
MSMg01no517_a11.b1 PHD_FILE: MSMg01no517_a11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:59 2005
(655 letters)
>mm_chr1_73129686_73130749
Length = 1064
Score = 1166 bits (603), Expect = 0.0
Identities = 644/663 (97%), Gaps = 13/663 (1%)
Strand = Plus / Minus
Query: 4 ggaattcttcattg--ccttcctccagaccctccctcatgagtcccctggccacccactc 61
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 ggaattcttca--ggaacttcctccagaccctccctcatgagtcccctggccacccactc 822
Query: 62 cctgggctctgtgctatggagagccagttatttacctggcagacaagaggctggagaatt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 cctgggctctgtgctatggagagccagttatttacctggcagacaagaggctggagaatt 762
Query: 122 ctaaggaaaaccttaaggatccacagaagaggtctatagattctagta--ta--ggtctt 177
|| |||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 761 ctctggaaaaccttaaggatccacagaagaggtctatagattctagtatttaagggtctt 702
Query: 178 cccatgagaactaccacttgcagcttaatcaacccaaatgatagagcttgattaagtaaa 237
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 701 cccatgagaactaccacttgcagcttaatcaacccaaatgatagaacttgattaagtaaa 642
Query: 238 acccaacagcccccaaagccctgctagcaagcacacactccaatccatttcccttaaatt 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 acccaacagcccccaaagccctgctagcaagcacacactccaatccatttcccttaaatt 582
Query: 298 ataaagtgcagctgacatgcaaagagtgtggacctgcacagctcaagtaattatattaaa 357
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 581 ataaagtgcagctgacatgcaaagagtgtggatctgcacagctcaagtaattatattaaa 522
Query: 358 aacacctgtggctcccacttgacttaaacaaaatctcgccaatcattctgaatgtttgca 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 aacacctgtggctcccacttgacttaaacaaaatctcgccaatcattctgaatgtttgca 462
Query: 418 agttcctgcctcattggattctcccccgtttcaaagaaaccgctatgaccaatttcattt 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 agttcctgcctcattggattctcccccgtttcaaagaaaccgctatgaccaatttcattt 402
Query: 478 tcatctttttttttttt-----ggttttgatttttttgttttcctttgtaattttgccac 532
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tcatctttttttttttttttttggttttgatttttttgttttcctttgtaattttgccac 342
Query: 533 acatgcatgtgtcttcaaacaatccattgtttcattttgcttcttttgaagtttacataa 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 acatgcatgtgtcttcaaacaatccattgtttcattttgcttcttttgaagtttacataa 282
Query: 593 acggagtcctggtgtatttagtctatgatctgctgcatttgcccaacatcacacatttga 652
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 281 acggagtcctggtgtatttagtctatgatcttctgcatttgcccaacatcacacatttga 222
Query: 653 ggt 655
|||
Sbjct: 221 ggt 219
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1064
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1054
Effective search space: 679830
Effective search space used: 679830
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_a11.g1 MSMg01no517_a11.g1 CHROMAT_FILE:
MSMg01no517_a11.g1 PHD_FILE: MSMg01no517_a11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:59 2005
(637 letters)
>mm_chr1_72935656_72936692
Length = 1037
Score = 1232 bits (637), Expect = 0.0
Identities = 637/637 (100%)
Strand = Plus / Plus
Query: 1 caacatccatccaaaatttgactgattgctcttaattaaattccccactaggtcatttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caacatccatccaaaatttgactgattgctcttaattaaattccccactaggtcatttgg 260
Query: 61 aaaaatgtacaaggcgagagtcttagagacgtgctcaccccacccccacttcttcttttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaatgtacaaggcgagagtcttagagacgtgctcaccccacccccacttcttcttttg 320
Query: 121 attccaggctgctctcatcacactccttctcttctttggagagagaatatgaggaaagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attccaggctgctctcatcacactccttctcttctttggagagagaatatgaggaaagag 380
Query: 181 ctgcaagaacttaggcataattggggaaaagtaaatcacacctcagaggctctaacttca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgcaagaacttaggcataattggggaaaagtaaatcacacctcagaggctctaacttca 440
Query: 241 gtgcaagaggccaacccagcaatggcttcatgagtgtggcaagcaaaggttttgggctgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgcaagaggccaacccagcaatggcttcatgagtgtggcaagcaaaggttttgggctgg 500
Query: 301 gacttattgaagtttggcagggtcagtcctcggtaggaggagggatggaagacttaacag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacttattgaagtttggcagggtcagtcctcggtaggaggagggatggaagacttaacag 560
Query: 361 aatggagcatagctggctctgggttgtgaaaaggggtgttggaagaagcctttagctgct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatggagcatagctggctctgggttgtgaaaaggggtgttggaagaagcctttagctgct 620
Query: 421 ggctgagtcctggaggacagaggaaaggggtcagcattataagttgcaatgaagtccgaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggctgagtcctggaggacagaggaaaggggtcagcattataagttgcaatgaagtccgaa 680
Query: 481 cagttggccagagctctttgattggcttggaatggtggcacctggatctttcagtttaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagttggccagagctctttgattggcttggaatggtggcacctggatctttcagtttaag 740
Query: 541 acacatcccctggtatttttgatgctagtggtcagaggacttgaccagaattaagtagtg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acacatcccctggtatttttgatgctagtggtcagaggacttgaccagaattaagtagtg 800
Query: 601 tcaagcaacggacaagagtgaggcaggctggctacag 637
|||||||||||||||||||||||||||||||||||||
Sbjct: 801 tcaagcaacggacaagagtgaggcaggctggctacag 837
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space: 643929
Effective search space used: 643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
