Query= MSMg01no517_b18.b1 MSMg01no517_b18.b1 CHROMAT_FILE:
MSMg01no517_b18.b1 PHD_FILE: MSMg01no517_b18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:05 2005
(655 letters)
>mm_chr1_40715711_40716767
Length = 1057
Score = 1093 bits (565), Expect = 0.0
Identities = 611/653 (93%), Gaps = 42/653 (6%)
Strand = Plus / Minus
Query: 5 gaattccatctacaatggtttgcagctccaggtctgcgtcttgctgcatgagggagcaca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 gaattccatctacaatggtttgcagctccaggtctgcgtcttgctgcatgagggagcaca 860
Query: 65 gcatagtctgacggtgttcccagagacagagcccccaccaagatagtctgacggtgctcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 gcatagtctgacggtgttcccagagacagagcccccaccaagatagtctgacggtgctcc 800
Query: 125 cagagacagagccccaccaagatagtctgaccgtgttcccagagacagagcccccaccaa 184
||||||||||| |||||||||
Sbjct: 799 cagagacagag----------------------------------------ccccaccaa 780
Query: 185 gatagtctgacggtgttccaagagacagagccccaccaagatagtctgacggtgttccca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 gatagtctgacggtgttccaagagacagagccccaccaagatagtctgacggtgttccca 720
Query: 245 gagacagagccccaccaaggactgggaagcaagggcgagtgtgttttcattcctttccct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 gagacagagccccaccaaggactgggaagcaagggcgagtgtgttttcattcctttccct 660
Query: 305 ctcagaggaaaagcgtgttttagttctgcagctgatacttcctaatgcttcccttccaac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 ctcagaggaaaagcgtgttttagttctgcagctgatacttcctaatgcttcccttccaac 600
Query: 365 gcgctctattaccagctctaaaagcatcctagttttgtttagataatatcagtattaata 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 gcgctctattaccagctctaaaagcatcctagttttgtttagataatatcagtattaata 540
Query: 425 tgacatctatattcaaataaatatctcctctcctgggtcg--ccccccccccatctcttt 482
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 539 tgacatctatattcaaataaatatctcctctcctgggtcgccccccccccccatctcttt 480
Query: 483 taagctttatcagttttcagataagcaattttgtacttccttgttcaacggggaaacgtg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 taagctttatcagttttcagataagcaattttgtacttccttgttcaacggggaaacgtg 420
Query: 543 atcacagtccacgtgggatctttcagtgcagtgcagccctggaaatgaagttaattgggc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 atcacagtccacgtgggatctttcagtgcagtgcagccctggaaatgaagttaattgggc 360
Query: 603 cggttcagtcggtgcaaaggttgaaggcaggatgatgtttgaagcatcttaag 655
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 cggttcagtcggtgcaaaggttgaaggcaggatgatgtttgaagcatcttaag 307
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1057
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1047
Effective search space: 675315
Effective search space used: 675315
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_b18.g1 MSMg01no517_b18.g1 CHROMAT_FILE:
MSMg01no517_b18.g1 PHD_FILE: MSMg01no517_b18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:05 2005
(591 letters)
>mm_chr1_40531032_40532022
Length = 991
Score = 1135 bits (587), Expect = 0.0
Identities = 590/591 (99%)
Strand = Plus / Plus
Query: 1 tatgccttttcttaaaagtaagttataaagtgtcatactctgaagatgtggcctccaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgccttttcttaaaagtaagttataaagtgtcatactctgaagatgtggcctccaagc 260
Query: 61 cttcgagtgagggttggctaagctcttcaactttctgtttaggggaagccgtcagcttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttcgagtgagggttggctaagctcttcaactttctgtttaggggaagccgtcagcttta 320
Query: 121 tcttcatcttggttctgaaagtgtcttatctcctgtatgtcttctcttaagacagaagac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttcatcttggttctgaaagtgtcttatctcctgtatgtcttctcttaagacagaagac 380
Query: 181 agcacaggagtacgatactgagatttctcccagctttcttactgactgtttatactcatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcacaggagtacgatactgagatttctcccagctttcttactgactgtttatactcatg 440
Query: 241 gagggggatcagggaaaaatcacccttgtcctgttttatctccctttcctcttgcaatct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagggggatcagggaaaaatcacccttgtcctgttttatctccctttcctcttgcaatct 500
Query: 301 gctgtagaaagttgtattcaccgatcacaaattcatgtggtagagggagaacctttttat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctgtagaaagttgtattcaccgatcacaaattcatgtggtagagggagaacctttttat 560
Query: 361 ctgaagccatgtggcatatctgcaccagtgcacaggaatgaaacagccaccatgagatgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgaagccatgtggcatatctgcaccagtgcacaggaatgaaacagccaccatgagatgg 620
Query: 421 ttcaaaggcagtgcttcacatgagtatagagagctgaacaacagaagctcgtccagagtc 480
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 621 ttcaaaggcagtgcttcacatgagtatagagagctgaacaacagaagctcgcccagagtc 680
Query: 481 acttttcatgatcacaccttggaattctggccagttgagatggaggatgagggaacgtac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acttttcatgatcacaccttggaattctggccagttgagatggaggatgagggaacgtac 740
Query: 541 atttctcaagtcgggtgagtgagccaatttgttttaacgtatttcctgaga 591
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atttctcaagtcgggtgagtgagccaatttgttttaacgtatttcctgaga 791
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space: 569961
Effective search space used: 569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
