XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATGGC
TGATTAATGACAGACTCTTTTGGAGAACCCAGCATAGTAGGTACCTGCTC
CATTGCAGACCTGGGGACAAAATTTACAGCAGCAGCCACACACCTCACAA
AGGCAATGATGAGACTATAGGAAAAATATTGTGGAAATAAGTCTATTTTT
CTCCTAGTTTTTCTTTCTTTTACCTGTTTTCTCATTTTTCTCCTTCGTTC
TCACTGGCCATTTGTTTATTTACCTCTCTCTTCTCTCCTTCCTGCTCTCC
CTCTCCCCGCTTCTCTTTCTTGCTTGATCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGT
GTGTGTGTGTGTGTGTGNGTGNGTGTGTTTTTNNGTTTTTTTTGGTTGTT
TTTTTTTTGTGNGTGTTTGTTTTNTTTNGNGGGGGGTNTTTTTGGTGGTG
NGTTTTTTGGTGTGTTTTTGTGTTTTTGNGTTGTTGGTGTGGGGGTGTTT
TTGGTTNGTTGTGTTGTTTTTGGTTTTGTGNNGTGGGTTTTTTTGTGTTT
TTTTTGGTTGGGGGGGGTGGGGGGGTTTGGTTTGGGTTTTGTTTTNTTTT
NNNGGTTNTTGTTTGTTTGGGTGGGNNGTTTGTTTNTTTTTTTTTTTTGT
TTTTTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGAGAAGCACC
TGAAAAAACGTTCAGCATCCTTAATCATCAGGAAAATACAAATCAAAGCA
ACCCTGAGATTTCAACGCATACCAGTCAGAATGGCTAAGATCAAACATTC
AGGTGACAGCAGATGCTGGCCAGGATGTGGAGAAAGAGGAACACTCTTCC
ATTGTTGGTGGGATTGCAAGGTTTTACAACCACTTTTGAAAGCAGTCTGG
CGGTTCCTCAGAAAATTGGACATAGTACTACCAGAGGATCCCACAAGACC
TCTCCTGGGCATATATCGAGAAGATGTTCCAACTGGTAAAAAGGACACAT
ACTCCACTATGTTCATAGAAGCCTTATTTATAATAGCCAGAAGCTGGAAA
GAACCCAGATGCCCCTCAACAGAGGAATGAATACAGAAAATGGGGTACAT
TTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAAT
TCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAATC
CAATCACAAAAGACCTCACACAATATGTACTCACTGATAAGTGGATATTA
TCCCAGAAACTTAGAATACCATGATACAAGATACAATTTGTGAAACACAT
GAAACTCAAGAAAAACAAAGACCAAAGTGTGGACACTTTTTCCCTTCTTA
A

Query= MSMg01no517_h13.b1 MSMg01no517_h13.b1 CHROMAT_FILE:
MSMg01no517_h13.b1 PHD_FILE: MSMg01no517_h13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:34 2005
         (409 letters)



>mm_chr1_81628214_81629022
          Length = 809

 Score =  696 bits (360), Expect = 0.0
 Identities = 391/404 (96%), Gaps = 7/404 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatggctgattaatgacagactcttttggagaacccagcatagtaggtacctgct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatggctgattaatgacagactcttttggagaacccagcatagtaggtacctgct 264

                                                                       
Query: 65  ccattgcagacctggggacaaaatttacagcagcagccacacacctcacaaaggcaatga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccattgcagacctggggacaaaatttacagcagcagccacacacctcacaaaggcaatga 324

                                                                       
Query: 125 tgagactataggaaaaatattgtggaaataagtctatttttctcctagtttttctttctt 184
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 325 tgagactataggaaaaatattgtggaaataagtctatttttctcccagtttttctttctt 384

                                                                       
Query: 185 ttacctgttttctcatttttctccttcgttctcactggccatttgtttatttacctctct 244
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 385 ttacctgttttctcatttttctccctcgttctcactggccatttgtttatttacctctct 444

                                                                       
Query: 245 cttctctccttcctgctctccctctccccgcttctctttcttgcttgatctctctctctc 304
           ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 445 cttctctccttcctgctctccctctccccgcttctctctcttgctcgatctctctctctc 504

                                                                       
Query: 305 tctctctctctctctctctctctctctctctctctctctctgtgtgtgtgtgtgtgtgtg 364
           ||||||||||||||||||||||||||||||| |     ||||||||||||||||||||| 
Sbjct: 505 tctctctctctctctctctctctctctctct-t-----tctgtgtgtgtgtgtgtgtgtc 558

                                                       
Query: 365 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg-tgtgt 407
           ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 559 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgatgtgt 602


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 148
Number of extensions: 32
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)