BAC Information

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BAC

Clone NameMSMg01-517I08
Chromosome1 (Build37)
Map Location 34,327,791 - 34,328,290
singlet/doubletsinglet
Overlap geneDst
Upstream geneEG666108, Prim2, 1700001G17Rik, Rab23, Bag2, Zfp451, OTTMUSG00000022109, B230209C24Rik
Downstream geneLOC100040913, LOC383629, LOC100040938, Ccdc115, Imp4, Ptpn18, Tesp1, Cfc1, Tesp2, 9430069J07Rik, AA619741, Arhgef4, BC043098, Plekhb2, LOC666261
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-517I08.T7 (MSMg01no517_i08.b1)MSMg01-517I08.TJ (MSMg01no517_i08.g1)
ACCAG589253AG589254
length773778
length of high quality
(start - end)
516 (29 - 544)271 (72 - 342)
definitionCHROMAT_FILE: MSMg01no517_i08.b1 PHD_FILE: MSMg01no517_i08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:38 2005CHROMAT_FILE: MSMg01no517_i08.g1 PHD_FILE: MSMg01no517_i08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTTGCGGGCGCTATACGACTCCTATCCGGAGAGGATCCGCGGAATTCTC
AATCAGCGCTGGCAGGATATTTTGGAAAAGACAGATCAAAGAAAGCAGCA
GCTGGACAGCGCCTTGCGCCAGGTGACTAGAGAGGCGGAGAGAGTCCCCA
AGTGATACGGGTGTGCCTCGCAAGCCCTCGGGTGCAGGTCTAATGGTGAT
GCTTTAAAGAGAGGAGTAAAAATAATCAGGATAAAGAGCAGAGCTGATAA
GGAGGTGGAGCTCCAGTTCTTAGCCTAATAACCTAATACCCTTATGCCCG
AGCTTCCTCGGCGTGCTCAGGTAGTGAGCGCTACTCCTGGCACCTGGCAT
TCTGATGAGACGCAGAGACGGCTTAGCAGGCTGGGGCCATTTTGACCTTG
CTGGAGAATGATAGCATTTGTGACACAAACTTAAAAACCACCTGTCACTG
CAGGCCAAAGGGTTCCACGGTGAAATCGAAGATTTGCAACAGTGGCTGAC
GGACACAGAGCGTCATCTCTTGGCATCTAAACCTCTGGGAGGTCTCCCAG
AGACAGCCAAGGAGCAGCTTAACGCACATATGGTACGTATGGTATTTTCT
ACAGCCCTCGCCCTCGTCATACATAGATAATAATGGAAGATGATATAGTT
AAAAAATTAAGTTTTGTGGCAAAAATCACTATGTGTACATGCTAGAAACA
GCACCATTTAGCAATTAAAATTTTCTAGTAAGAATCTGTCTCAAANGCTA
AAAAAGTTTTAAAGAAGTTATCG
TGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTTAGGTGGCTTCTCTCAGTGACCGACTG
TGACCTGAAAGACAAATAAACTCCGTCTCCTCTTTGTTATGGTTTCTATT
GCTGTGATCATCATGACCCAGAGCAACTTGGGGAAGAGAGGATTTATGTC
CCTTGTACTTCCAAAGTCACAGTCTACCATCAAAGGAAGTCACACCAGGA
ACTCACGGCAGGAATCTGGTATGCAGGAACTGGGCCAGAGACCAGGAGTG
CTTGCTTCTCACTGGCTTGCTCAGCCTGTTTTCATACATCACTCAGGACC
ATCAGCCCAGGGTAAGTCCTACCCACAGTGAGCTCTGGTCTTCCCACATC
AATCATCAGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAGCTGGGCTTGGT
GGCGCACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTC
TGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGG
CTATACAGAAAAACCCTGTCTCAAAAAACCNNAAAACTAAAACTAAAAAA
CTTACTCAAAAAAAAAACCAAAAGAAAAGAAAAGCCCTTAAGTGTTAATG
AACTGTTCTTTAGAACCTTGGAAAATAANATGATAGAGACTGGCTTATGA
TGTTTCTGAGGGAAANCTGAGNACCTTTCTCCAGTTCCTTTGTGTGGGGA
ATTANAATTANAATCTTGCAGGATGGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no517_i08.b1 MSMg01no517_i08.b1 CHROMAT_FILE:
MSMg01no517_i08.b1 PHD_FILE: MSMg01no517_i08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:38 2005
         (516 letters)



>mm_chr1_34327577_34328490
          Length = 914

 Score =  861 bits (445), Expect = 0.0
 Identities = 488/503 (97%), Gaps = 4/503 (0%)
 Strand = Plus / Plus

                                                                       
Query: 15  gaattctcaatcagcgctggcaggatattttggaaaagacagatcaaagaaagcagcagc 74
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gaattctcaatcagcgctggcaggatattttggaaaagacagatcaaagaaagcagcagc 274

                                                                       
Query: 75  tggacagcgccttgcgccaggtgactagagaggcggagagagtccccaagtgatacgggt 134
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 275 tggacagcgccttgcgccaggtgactagagaggcggagagagtccccaagtgatgcgggt 334

                                                                       
Query: 135 gtgcctcgcaagccctcgggtgcaggtctaatggtgatgctttaaagagaggagtaaaaa 194
           |||||| || ||||||   ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 335 gtgccttgctagccct--tgtgcaggtccaatggtgatgctttaaagagaggagtaaaaa 392

                                                                       
Query: 195 taatcaggataaagagcagagctgataaggaggtggagctccagttcttagcctaataac 254
           ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 393 taatcgggataaagagcagagctgataaggaggcggagctccagttcttagcctaatagc 452

                                                                       
Query: 255 ctaatacccttatgcccgagcttcctcggcgtgctcaggtagtgagcgcta-ctcctggc 313
           ||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct: 453 ctaatacccttatgcccgagcttcctcggcgtgctcaggtagtgagcac-agctcctggc 511

                                                                       
Query: 314 acctggcattctgatgagacgcagagacggcttagcaggctggggccattttgaccttgc 373
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 acctggcattctgatgagatgcagagacggcttagcaggctggggccattttgaccttgc 571

                                                                       
Query: 374 tggagaatgatagcatttgtgacacaaacttaaaaaccacctgtcactgcaggccaaagg 433
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tggagagtgatagcatttgtgacacaaacttaaaaaccacctgtcactgcaggccaaagg 631

                                                                       
Query: 434 gttccacggtgaaatcgaagatttgcaacagtggctgacggacacagagcgtcatctctt 493
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 gttccacggtgaaatcgaagatttgcaacagtggctgacggacacagagcgtcatctctt 691

                                  
Query: 494 ggcatctaaacctctgggaggtc 516
           |||||||||||||||||||||||
Sbjct: 692 ggcatctaaacctctgggaggtc 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 914
Length adjustment: 10
Effective length of query: 506
Effective length of database: 904
Effective search space:   457424
Effective search space used:   457424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)