BAC Information

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BAC

Clone NameMSMg01-517J10
Chromosome1 (Build37)
Map Location 160,591,530 - 160,754,421
singlet/doubletdoublet
Overlap geneAstn1, Pappa2
Upstream gene6430517E21Rik
Downstream gene4930562F17Rik, EG240853, LOC664972, Rfwd2, EG620484, Tnr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-517J10.T7 (MSMg01no517_j10.b1)MSMg01-517J10.TJ (MSMg01no517_j10.g1)
ACCAG589303AG589304
length755752
length of high quality
(start - end)
650 (39 - 688)591 (68 - 658)
definitionCHROMAT_FILE: MSMg01no517_j10.b1 PHD_FILE: MSMg01no517_j10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:43 2005CHROMAT_FILE: MSMg01no517_j10.g1 PHD_FILE: MSMg01no517_j10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(160,753,851 - 160,754,421)(160,591,530 - 160,592,120)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAC
TCATTGCCCCACTGTGGTTGAAAGGATATTTTCTATTTTCTTATGTTAGG
ATTCTAGATCTGACTTTTAGACTTATCTTTCACAGACTTGGATTTTTCTG
CATATAGATTCATAATACTTTTAAAGAAATACAGCATGCCAATTTCTCTA
ATAGCAGCCACTGAAGTGTTCATTCTTGCCTTGTTTTCTAGTGCGACACC
CATTACGTACCAGCTCCTAGGGAATGCATGAGTCTGTTTCAAAGTCTCTA
TTGCACTTACTTGACCCATCTTTCTGTTCATTACAAAAATTCACAGCTTG
TATTGCTATGGATTTTACTGTGTAAACAAATTTGGCTGTAAATTGAAGTT
CATTATTAGAAATGTAACCTTGTGATTCTGTCTTTCTGAATCATCCTTTT
TTAAAAAAATTTTTTATTAGGTATTTATTTCATTTACATTTCCAATGCTA
TCCCAAAAGTCCCCCACACCCTCCCCCACCCATTCCCCCACCCACCCACT
CCAACTTCTTGGCCCTGGTGTTCCCCTGTACTGAGGCATATAAAGTTTGC
ACGACTTCTCTTTCCACTGATGGCCATCTTCTGATACATACGCAGCTAGA
GACACAAGCTCGGGGGGGGGGGCGGTTACAAACTTAGAATACCCCAGATA
TAAGATACAATTTGTGAAACACATGAAACTCAAGAAGAATGAAGACCAAG
TGTGG
TTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCATTCTCGTTTGCAGCTGAATAGTCTCCTTCCC
TCCTCTTAGAGGCTTCCTGCTGCTGTGTGCAACCCTAGAACCTCACCTTT
TCCTTAGGTCCACTCAACCCTATTGTGGAATTTGGATATTTACACGAATC
TGGTTTGCTTGTTTATTATCTAGCTGGAAAATTTATGCAGGCAGGGACCA
TATGTGTCTTCTTTTGCGTCATTGCATCCTTCATGCTTAGCACAGGAAAT
GGCCCCTTGTAGATGGTTAGCAAGCAGGTGTTGACTGAAGACACCATTAA
GCAGCAGGCGCTTTTAGTAGGTCTATCTTAAAGAGTATGTCTTCCTAGTT
TTTAAATGCTCACTTTTTTATTTGAATCTCAAACAGAACAGTATAAAGTG
AGGAACTTGCTGATGGAGTCAATGTTAATTAAGAGCAGGTATTGGGAAGA
GCCTGAGTCCAATGAGCCATGCAGGGCCCACTCCCTGGCACTGCTTCATT
CACTAGCCTGTGACCCTGAACATGTACCTAACTATCACTCTCAGAAGTTT
CACTGTAAGTCATTATCACCATCCACCCAAGAGTTAGTATGTAAATGGGC
CTTACAAATTAGAAACACTATACAAATAATAACTATGATCAGGAGTCAGT
TCCTACTTCTTAGAAACTCTAAGTCTCACGAGTGGAGTCAGTTGGACCCT
TA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no517_j10.b1 MSMg01no517_j10.b1 CHROMAT_FILE:
MSMg01no517_j10.b1 PHD_FILE: MSMg01no517_j10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:43 2005
         (650 letters)



>mm_chr1_160753851_160754902
          Length = 1052

 Score =  934 bits (483), Expect = 0.0
 Identities = 536/573 (93%), Gaps = 32/573 (5%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactcattgccccactgtggttgaaaggatattttctattttcttatgttaggat 64
           |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 571 gaattcactcattgccccgctatggttgaaaggatattttctattttcttatgttaggat 512

                                                                       
Query: 65  tctagatctgacttttagacttatctttcacagacttgga--tttttctgcatatagatt 122
           ||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||
Sbjct: 511 tctagatctgacttttagacttatctttcacagacttggatttttttttgcatatagatt 452

                                                                       
Query: 123 cataatacttttaaagaaatacagcatgccaatttctctaatagcagccactgaagtgtt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 cataatacttttaaagaaatacagcatgccaatttctctaatagcagccactgaagtgtt 392

                                                                       
Query: 183 cattcttgccttgttttctagtgcgacacccattacgtaccagctcctagggaatgcatg 242
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 cattcttgccttgtttgctagtgcgacacccattacgtaccagctcctagggaatgcatg 332

                                                                       
Query: 243 agtctgtttcaaagtctctattgcacttacttgacccatctttctgttcattacaaaaat 302
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 331 agtctgtttcaaagtctctattgcacttacttggcccatctttctgttcattacaaaaat 272

                                                                       
Query: 303 tcacagcttgtattgctatggattttactgtgtaaacaaatttggctgtaaattgaagtt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tcacagcttgtattgctatggattttactgtgtaaacaaatttggctgtaaattgaagtt 212

                                                                       
Query: 363 catta----------------------------ttagaaatgtaaccttgtgattctgtc 394
           |||||                            |||||||||||||||||||||||||||
Sbjct: 211 cattattcatgaacattttgtttcaatgtaattttagaaatgtaaccttgtgattctgtc 152

                                                                       
Query: 395 tttctgaatcatccttttttaaaaaaattttttattaggtatttatttcatttacatttc 454
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 151 tttctgaatcatccttttt--aaaaaattttttattaggtatttatttcatttacatttc 94

                                                                       
Query: 455 caatgctatcccaaaagtcccccacaccctcccccacccattcccccacccacccactcc 514
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  caatgctatcccaaaagtcccccacaccctcccccacccattcccccacccacccactcc 34

                                            
Query: 515 aacttcttggccctggtgttcccctgtactgag 547
           |||||||||||||||||||||||||||||||||
Sbjct: 33  aacttcttggccctggtgttcccctgtactgag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1052
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1042
Effective search space:   666880
Effective search space used:   666880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no517_j10.g1 MSMg01no517_j10.g1 CHROMAT_FILE:
MSMg01no517_j10.g1 PHD_FILE: MSMg01no517_j10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:43 2005
         (591 letters)



>mm_chr1_160591330_160592320
          Length = 991

 Score = 1096 bits (567), Expect = 0.0
 Identities = 585/591 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattctcgtttgcagctgaatagtctccttccctcctcttagaggcttcctgctgctgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattctcgtttgcagctgaatagtctccttccctcctcttagaggcttcctgctgctgtg 260

                                                                       
Query: 61  tgcaaccctagaacctcaccttttccttaggtccactcaaccctattgtggaatttggat 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 tgcaaccctagaacctcaccttttccttaggtccgctcaaccctattgtggaatttggat 320

                                                                       
Query: 121 atttacacgaatctggtttgcttgtttattatctagctggaaaatttatgcaggcaggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttacacgaatctggtttgcttgtttattatctagctggaaaatttatgcaggcaggga 380

                                                                       
Query: 181 ccatatgtgtcttcttttgcgtcattgcatccttcatgcttagcacaggaaatggcccct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccatatgtgtcttcttttgcgtcattgcatccttcatgcttagcacaggaaatggcccct 440

                                                                       
Query: 241 tgtagatggttagcaagcaggtgttgactgaagacaccattaagcagcaggcgcttttag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtagatggttagcaagcaggtgttgactgaagacaccattaagcagcaggcgcttttag 500

                                                                       
Query: 301 taggtctatcttaaagagtatgtcttcctagtttttaaatgctcacttttttatttgaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taggtctatcttaaagagtatgtcttcctagtttttaaatgctcacttttttatttgaat 560

                                                                       
Query: 361 ctcaaacagaacagtataaagtgaggaacttgctgatggagtcaatgttaattaagagca 420
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcagtcagaacagtataaagtgaggaacttgctgatggagtcaatgttaattaagagca 620

                                                                       
Query: 421 ggtattgggaagagcctgagtccaatgagccatgcagggcccactccctggcactgcttc 480
           ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 ggtattgggaagagcctaagtccaatgagccatgcagggcccactccctgacactgcttc 680

                                                                       
Query: 481 attcactagcctgtgaccctgaacatgtacctaactatcactctcagaagtttcactgta 540
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 681 attcactagcctgtgaccctgaacatgtacctaactaccactctcagaagtttcactgta 740

                                                              
Query: 541 agtcattatcaccatccacccaagagttagtatgtaaatgggccttacaaa 591
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agtcattatcaccatccacccaagagttagtatgtaaatgggccttacaaa 791


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space:   569961
Effective search space used:   569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)