BAC Information

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BAC

Clone NameMSMg01-517L01
Chromosome1 (Build37)
Map Location 175,347,581 - 175,348,217
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3
Downstream geneAim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-517L01.T7 (MSMg01no517_l01.b1)MSMg01-517L01.TJ (MSMg01no517_l01.g1)
ACCAG589378AG589379
length743756
length of high quality
(start - end)
703 (38 - 740)637 (67 - 703)
definitionCHROMAT_FILE: MSMg01no517_l01.b1 PHD_FILE: MSMg01no517_l01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:52 2005CHROMAT_FILE: MSMg01no517_l01.g1 PHD_FILE: MSMg01no517_l01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAC
ATTTGGATATTATAAAGGACTAATATCCAAAATGTTTAAAGCACTCAAGA
AACTAGATACTAAAAAGAAGCAAAAAACAAAAATGAATAATCCAATTTAA
ACTTGGGGTACAGATCTAAGCAGGGGGTCCTTAAAAGAGGAATTGCAATT
GACTGAGAAACAAAGAAATGTAAACACTTTTAGCCATTTGGGAAATTCAA
ATCAAAACTACTTTGAGATTCACTCTTATACCTACCAGAATGAGTAAGAC
CAATAACAGATGTGACAACTCCTGTTAGTGAGGACGTGGAACAAGGGAAC
CACTTCTGCATTGCAGTTGGGAGTGAAAACTTGTACAGCCACTATGGAAA
TTAGTATGACAGTTTCTCAAAATATTGAGAATCAATCTACATCAAGACCC
AGATATACCATTCTTGCCCATATATCCAAGGGATGCTTCATCCTATGATA
TAGACAGACACTTGGTCCACCAAGTTCACAACTTCTCTGTTCACAATAGT
GACAAAATTGGAAACAACCTACATGTCCCTCACCAAAGAATGGATAAAGA
AAATATGTGTAAAAGGAATTAATCATTCTTACTAGCCTGTATAAAAGGCA
TACAATCTGGGTGTTTTATTCATAAGCCATAAGCCTATATTGGGCAAGTT
TGGAGCTATTCTAGGTTATTTCCCAGCCATATGTTCCTTGTCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAGGATAGCCAGGGCTACACAGAGAAACCCTGTC
TCGAAAAACAAAAACAAACAAACAAACAAACAAAAAAACAGTGTGAGGAA
CTGAATTGATAAGGATGGCAGACAAGAGAGGAAAGAGAAAATCATATCAC
ATGAAAGGTTGAATATGGAGGAGGGAAACTGAGGCTGCCAAGGGCAAGAG
CCTATATTAATAGAACCACTGCAGCCTCAAGACCTGCAGTAAAAGTCCAA
TATAGCTAATAAGGCGATCAATTCTTCATTAAAAGACCTGCACCTCTCAG
CCCATGGTCAAAAACAGTAATGGGACTTAAATTATGTCTTTGTATGCTAC
TAGGAAGAAGAAGAAGAAAAAAAAAAAACTAAAAAGCTGGGGTTGAATTG
TCTTAGCCAGTGCTCTATTACTATCAAGAGACACCATCACCATGACAACT
CTTATAAAGGAAGCATTTAATTGGGACTTGTCTATATTTCAGAAATTTAT
TATTGCCATGGCAGGGAGCATGGCATAGTGCTGGTAGACATGGTGCTGAA
AAAGTACCTGAGAGTTCTATATCCATATATGCAACAATGGATAGAGAGAG
CCTCTGGGCCTTGATAGAACCTAGCGGGGAAACCCCCACTCAATTCCCGA
TTCGGCGTGCACCCAAAAAAATCATGAAGGACCATCTTGATGTAATTACA
TGAGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no517_l01.g1 MSMg01no517_l01.g1 CHROMAT_FILE:
MSMg01no517_l01.g1 PHD_FILE: MSMg01no517_l01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:52 2005
         (637 letters)



>mm_chr1_175347562_175348598
          Length = 1037

 Score = 1232 bits (637), Expect = 0.0
 Identities = 637/637 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggatagccagggctacacagagaaaccctgtctcgaaaaacaaaaacaaacaaacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 caggatagccagggctacacagagaaaccctgtctcgaaaaacaaaaacaaacaaacaaa 597

                                                                       
Query: 61  caaacaaaaaaacagtgtgaggaactgaattgataaggatggcagacaagagaggaaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 caaacaaaaaaacagtgtgaggaactgaattgataaggatggcagacaagagaggaaaga 537

                                                                       
Query: 121 gaaaatcatatcacatgaaaggttgaatatggaggagggaaactgaggctgccaagggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gaaaatcatatcacatgaaaggttgaatatggaggagggaaactgaggctgccaagggca 477

                                                                       
Query: 181 agagcctatattaatagaaccactgcagcctcaagacctgcagtaaaagtccaatatagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 agagcctatattaatagaaccactgcagcctcaagacctgcagtaaaagtccaatatagc 417

                                                                       
Query: 241 taataaggcgatcaattcttcattaaaagacctgcacctctcagcccatggtcaaaaaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 taataaggcgatcaattcttcattaaaagacctgcacctctcagcccatggtcaaaaaca 357

                                                                       
Query: 301 gtaatgggacttaaattatgtctttgtatgctactaggaagaagaagaagaaaaaaaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gtaatgggacttaaattatgtctttgtatgctactaggaagaagaagaagaaaaaaaaaa 297

                                                                       
Query: 361 aactaaaaagctggggttgaattgtcttagccagtgctctattactatcaagagacacca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 aactaaaaagctggggttgaattgtcttagccagtgctctattactatcaagagacacca 237

                                                                       
Query: 421 tcaccatgacaactcttataaaggaagcatttaattgggacttgtctatatttcagaaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 tcaccatgacaactcttataaaggaagcatttaattgggacttgtctatatttcagaaat 177

                                                                       
Query: 481 ttattattgccatggcagggagcatggcatagtgctggtagacatggtgctgaaaaagta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 ttattattgccatggcagggagcatggcatagtgctggtagacatggtgctgaaaaagta 117

                                                                       
Query: 541 cctgagagttctatatccatatatgcaacaatggatagagagagcctctgggccttgata 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 cctgagagttctatatccatatatgcaacaatggatagagagagcctctgggccttgata 57

                                                
Query: 601 gaacctagcggggaaacccccactcaattcccgattc 637
           |||||||||||||||||||||||||||||||||||||
Sbjct: 56  gaacctagcggggaaacccccactcaattcccgattc 20


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)