XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTT
ATTTATCAAAGACTGACAGCTCTATGTGACTATAAAAGACTTTGTTTTCT
TTTCTTCTTAGGAAGAAGAAAAAAGCATCCGAACTGGTCAAATTCCAAAA
GAAGACGGCAGAAAAAAAAGCCCCGTCAAGATGAGATGATGGGTAAGGGG
ATGCTGGAGAAGACTCCAGCAAGGGGGTACAGGAGGAGGCTTCAGCAAAG
GCTGTAGATCTGATGGAGTTCGTTCTGAACTCACTGGATAGGCAGGCACA
CAAGAGTTCTGGTCAGCACAGCGAACTGGCTTTAAATTTCACCAGACCTG
TTTTGCCACTGAGTAAATGGTGAACTGGAACATGTTGGAATCCTGTTCTG
AGGTTACACAGCCCAAGGTGAAGGGTGCAGAGTGTCAGGTTTCCTCTTTA
TTTATACACACTAGGATGGCAACCATCCTTCCTAACTAAAGGGAGAGTAA
ATAAACTTTGCTACTTTGAGATAAGGTGCAGAAGAGCCTGGGTCCTAGCC
CTGAGAGGCAGTTCAGAGGAAAAGCCCCCAGAAAAGCTTCAGAAAGGTGT
TCTCATGCCAGTGGATGCAGCTGTCCTTGGGGAGGCAGCTTCCAAAGTCC
CGAGAGGAAAAAGTGCTGTGTCCTCCCCTCCTCAGTGAAGGCCACTCATC
CATCTACCAGTCCTGTCCACTGCAGAGCCTCTGGGCCTCTGCCAACCCTT
GCCCAGAAACTGTCTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTACTGTTGCCTCTTAACATTGCAGACAGCATGG
CATCCCTTTGAGTTTTGAATACAGAGGAGGGACCTGGGAGACTTGGTTTT
ATTTGATTTTCAGGGGGAGCTATAGAAGGTGATGGATTTTTCTCTCTGGG
GTTACTTGGACTCTAGGATTCTGAGTCTTATGGGTCCTTGACTTTGATTG
GCACATCTTCAGCCTCATTCTCATGGCAGCTACTCTGCAGCGAGGGGGGC
TGTTGGCCATGGTGGACACTTCCTGGGATGGCAAAGAGAAAGAAAATAGC
CTAGAGCCTTGAATGTTTGAGGCTAAGTAGAATTATTCATTTAGAAACCA
GACCCTGCTTCCTTGCATGACTTCACAAAGGCTCCTTGGGGACTAAAGCC
AGCAAGGGGACCTTGCTTTAATTCAAACAATAGTTTGATGATCCTCTTTT
TCTCCTAGTAGATGCAGAGGTCCATAAAAATAGATATGGGGAGTAGCTAC
TTTAAGAGAAACACTTTAGGTAGAATGAATTAAACCAGTATTTTCAATCA
ATGAGTTCAAGAGTGAATACACTCTGTTAACAGTTCCTGGGAAACCCCTG
AAGGTGCACGAGGCCACAACTTCTACAGATTTGGGTCAAAGTAAGATTGA
GAAACACGTGTGACTGGTCATGATGGAAAATTCCTAGTGAGAGATTATGG
AGAGGC

Query= MSMg01no517_m10.b1 MSMg01no517_m10.b1 CHROMAT_FILE:
MSMg01no517_m10.b1 PHD_FILE: MSMg01no517_m10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:58 2005
         (634 letters)



>mm_chr1_85279030_85280063
          Length = 1034

 Score = 1094 bits (566), Expect = 0.0
 Identities = 602/614 (98%)
 Strand = Plus / Plus

                                                                       
Query: 21  aaagactgacagctctatgtgactataaaagactttgttttcttttcttcttaggaagaa 80
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 221 aaagactgacagctctatgtgactataaaagactttgttttcttttcttcttagcaagaa 280

                                                                       
Query: 81  gaaaaaagcatccgaactggtcaaattccaaaagaagacggcagaaaaaaaagccccgtc 140
           ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 281 gaaaaaaacatccgaactggtcaaattccaaaagaagacagcagaaaaaaaagccccgtc 340

                                                                       
Query: 141 aagatgagatgatgggtaaggggatgctggagaagactccagcaagggggtacaggagga 200
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 341 aagatgagatgatgggtaaggggatgctggaggagactccagcaagggggtacaggagga 400

                                                                       
Query: 201 ggcttcagcaaaggctgtagatctgatggagttcgttctgaactcactggataggcaggc 260
           || |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 401 ggattcagcaaaggctgtagatctgatggagttcgttctgaactcactatataggcaggc 460

                                                                       
Query: 261 acacaagagttctggtcagcacagcgaactggctttaaatttcaccagacctgttttgcc 320
           |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 acacaagatttcttgtcagcacagcgaactggctttaaatttcaccagacctgttttgcc 520

                                                                       
Query: 321 actgagtaaatggtgaactggaacatgttggaatcctgttctgaggttacacagcccaag 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 actgagtaaatggtgaactggaacatgttggaatcctgttctgaggttacacagcccaag 580

                                                                       
Query: 381 gtgaagggtgcagagtgtcaggtttcctctttatttatacacactaggatggcaaccatc 440
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 581 gtgaagggtgcagagtgtcaggtttcctctttatttatacacactaggatggcatccatc 640

                                                                       
Query: 441 cttcctaactaaagggagagtaaataaactttgctactttgagataaggtgcagaagagc 500
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 cttcctaactaaaaggagagtaaataaactttgctactttgagataaggtgcagaagagc 700

                                                                       
Query: 501 ctgggtcctagccctgagaggcagttcagaggaaaagcccccagaaaagcttcagaaagg 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 ctgggtcctagccctgagaggcagttcagaggaaaagcccccagaaaagcttcagaaagg 760

                                                                       
Query: 561 tgttctcatgccagtggatgcagctgtccttggggaggcagcttccaaagtcccgagagg 620
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 tgttctcatgcctgtggatgcagctgtccttggggaggcagcttccaaagtcccgagagg 820

                         
Query: 621 aaaaagtgctgtgt 634
           ||||||||||||||
Sbjct: 821 aaaaagtgctgtgt 834


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)