Query= MSMg01no517_m20.b1 MSMg01no517_m20.b1 CHROMAT_FILE:
MSMg01no517_m20.b1 PHD_FILE: MSMg01no517_m20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:01 2005
(645 letters)
>mm_chr1_196234710_196235751
Length = 1042
Score = 1174 bits (607), Expect = 0.0
Identities = 630/639 (98%), Gaps = 3/639 (0%)
Strand = Plus / Plus
Query: 7 gaattccagcccaaccttgaataaagtgacaccctttctcaaaatgaaccaaggaacaaa 66
||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattacagcacagccttgaataaagtgacaccctttctcaaaatgaaccaaggaacaaa 266
Query: 67 accagtaaacaaaagagacatcacctttagtatgttacacaacctgctgtgcacttaaca 126
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 267 accagtaaacaaaagagacatcacctttagtatgttacacaacctgctgtgcacctaaca 326
Query: 127 tggcagcacaaaggaaggaatcacatgattgagattaagatgataaataataggactaaa 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tggcagcacaaaggaaggaatcacatgattgagattaagatgataaataataggactaaa 386
Query: 187 tataaaacaagagtttcatgctatgcaagatctccatccttaacactagatgtctcagga 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tataaaacaagagtttcatgctatgcaagatctccatccttaacactagatgtctcagga 446
Query: 247 ggtatgctgtcttgttttccaaaggtattatgtgtaggataacctcaaaacaagagtgaa 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ggtatgctgtcttgttttccaaaggtattatgtgtaggataacctcaaaacaagagtgaa 506
Query: 307 agaaacacaaggaaaaacgttgtcctccacagcctcctccctaccttgtgagcctgaatc 366
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 507 agaaacacaaggaaaaacgttgtcctccacaacctcctccctaccttgtgagcctgaatc 566
Query: 367 atccagcaggttgttttctgtggtacccagactggagactcttcaaaccttctcagcttg 426
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 567 atccagcaggttgttttctgtggtacccagacaggagactcttcaaacct---cagcttg 623
Query: 427 agccaaaagacaacatgaagtggggctatgcaaacactcaagtaaggctaaaggagggag 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agccaaaagacaacatgaagtggggctatgcaaacactcaagtaaggctaaaggagggag 683
Query: 487 gtggcacttagtggagacaattctcacaaatatttttcatcgtagagatgtttcaagtcc 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gtggcacttagtggagacaattctcacaaatatttttcatcgtagagatgtttcaagtcc 743
Query: 547 tggcagcttcaatctttcattgcagagatttctattgattgggtaaaaattgcacacatc 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tggcagcttcaatctttcattgcagagatttctattgattgggtaaaaattgcacacatc 803
Query: 607 tgtcccaaacccagagcattaacacaaactcttccctgg 645
|||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tgtcccaaacccagagcattaacacaaactcttccctgg 842
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1042
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1032
Effective search space: 655320
Effective search space used: 655320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_m20.g1 MSMg01no517_m20.g1 CHROMAT_FILE:
MSMg01no517_m20.g1 PHD_FILE: MSMg01no517_m20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:01 2005
(577 letters)
>mm_chr1_196414080_196415057
Length = 978
Score = 1071 bits (554), Expect = 0.0
Identities = 572/578 (98%), Gaps = 1/578 (0%)
Strand = Plus / Minus
Query: 1 caatcagccatctaatatctgttgttgctt-gtcacattactggctggaagtgtggattc 59
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 778 caatcagccatctaatatctgttgttgcttggtcacattactggctggaagtgtggattc 719
Query: 60 ctccatgtagttcatctcccagcatggaaaacgtgacctgtgtactcagtgtgggtgcct 119
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 718 ctccatgtagttcctctcccagcatggaaaatgtgacctgtgtactcagtgtgggtgcct 659
Query: 120 acattcatgtttaaggaggatggggcatctcacacaggaatcctgggggacttggagcac 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 acattcatgtttaaggaggatggggcatctcacacaggaatcctgggggacttggagcac 599
Query: 180 atgtgccctgtgtaagaagagaagtgtttataacatgagccagctggggcccagagactc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 atgtgccctgtgtaagaagagaagtgtttataacatgagccagctggggcccagagactc 539
Query: 240 acaaacatgaaggtctgagagtggaatagagcaatgctcccctagtgactccacaggaag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 acaaacatgaaggtctgagagtggaatagagcaatgctcccctagtgactccacaggaag 479
Query: 300 cttcttttatcagctgggggttaatttgatataaaagattggtgctgtgaggggggttcc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cttcttttatcagctgggggttaatttgatataaaagattggtgctgtgaggggggttcc 419
Query: 360 caaactgtcctgtgcctggcctgatagatctattctctaatgaaatgcatgcagtttatt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 caaactgtcctgtgcctggcctgatagatctattctctaatgaaatgcatgcagtttatt 359
Query: 420 ttaccaattttaattatatgaagaatgagtatcagatttctttattcttctgctggccct 479
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 358 ttaccaattttaattatatgaagaatgagtgtcagatttctttattcttctgctggccct 299
Query: 480 gaactcaagccaacttctcaagccttacatgccctgagctaatggagcttttattccagc 539
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gaactcaagccaactcctcaagccttacatgccctgagctaatggagcttttattccagc 239
Query: 540 gagctgggaaccaacctacctttgtaaagaggggaaga 577
||||||||||||||||||||||||||||||| ||||||
Sbjct: 238 gagctgggaaccaacctacctttgtaaagagaggaaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 978
Length adjustment: 10
Effective length of query: 567
Effective length of database: 968
Effective search space: 548856
Effective search space used: 548856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
