BAC Information

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BAC

Clone NameMSMg01-517O18
Chromosome1 (Build37)
Map Location 68,802,564 - 68,958,337
singlet/doubletdoublet
Overlap geneErbb4
Upstream genenone
Downstream geneLOC667842, EG241084, Ikzf2, Spag16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-517O18.T7 (MSMg01no517_o18.b1)MSMg01-517O18.TJ (MSMg01no517_o18.g1)
ACCAG589553AG589554
length772770
length of high quality
(start - end)		659 (25 - 683)638 (65 - 702)
definitionCHROMAT_FILE: MSMg01no517_o18.b1 PHD_FILE: MSMg01no517_o18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:10 2005CHROMAT_FILE: MSMg01no517_o18.g1 PHD_FILE: MSMg01no517_o18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,957,691 - 68,958,337)(68,802,564 - 68,803,201)
sequence
GGCCGCAATACACTCACTATACCGAGAGGATCCGCGGAATTCAGTTATTG
CCTTTACAACATAGATAGTACTTCCTTGTGTTAAGAAGTATGTTGCATAA
TATACTTACCCATTAGCATAATAATTCAAAATAGAAATGCATATAGCAAC
AAATGCCTAAAATATGATCATTGGATTTTCACTAAACCCATGAACAACAT
TTTGTATGAACTGCTAAATTAACACAGATTACTTGGAGAACCGAAGAATT
GTGGTTCCTCTTCAGGCATGCCATGGTATTGAATAACTCCAAAAAGTTCT
ATAAGTGATAACTATAATAGGAAACGTCACATTCTTTAGAGTTCTTACAA
AGATTTGTTAACCCAGAATCACTATGAAACCAATAATGTTATATTGATGA
TTTTGTTTTTTAAATTTAATGTAAGTAAAAAATAGTCATGAGTGTAATGT
GGATGTCAAATTCTGCAAATATTGCATGTTGCTGTGGGTTTATCATTTAT
GATTCAGTGTAAGTCATGTGTTATGTTCCTATTTCAAAGTTGTTCCAGTT
TATCCAAGGTTTCTTTTTGATGGTGGGTGAGAAATAGTTATTGTGGGTGA
AAGGATAATTATTCCATTAAAATACAGTTAGACATTATCTTGGATTGGTA
GTAGGCAGTAAGTTCTCCTCTTGGGTCTATGATTCTCTCCAGNTTATTGT
ACCAAGGTGGGTTTCCTCCCTATCTAGTGGTGCTTAAGCCAATTAAACAG
CTGAAGATTACCCTCAAGACAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAACATTTAGTACCTTGTAAAAGAATCTCAAAGATAT
GTTTTGATTTTTCTCATGATTTAGAAATGAGGCGTTAAAAATGTCCACAA
ATGCTAGGTATCTATGCCCTTAGGACCTAATGACTCATGAGGAAAGAATA
AAAGGAATGGGTGAATAAAAAGAGACTGGTGAGGTATTCTATTAGACTTA
TGCTGAAATTTCTTAAATGAATTGGAGTTTTTCATCATTTTCAATCCTAA
AGAACTCATTTTTTCAGGAATGGCCTACTCAGTTTGATTTTTCTGAATTT
CCTTATTTTTCTTTTTCACTTTTTTTAGCACCTGAACCTGGGTTCTTTCA
CAAGTGAAGAATGACTCACGGAGACTTCATTGAAATTTCTTTCACTTCTG
GCTTGGTAGACTATATACAGCTACTCTTGGTGGCTTTGTGTCACTTTCTC
TCATTTTCAGAAAACACACACATGAACATACACACTTGAACATGTGTTTA
CACACACACACACACACACATGTACATAAAATATAGGTTTAAAGTCTGAG
GATATGACTAATTAGAACAATGTCTTACTAATGTGTAAAGCACTAGATAT
GATTTGCCAAAAATTACCCAAACATTTTGTAAAATAGGAGTTCAGTCTAC
ACTAATTTATTGTGAGTAGAGAGATTTAGGCNAGACAAAAGTCACAATTA
AAGTAGAAAAAAATAGATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no517_o18.b1 MSMg01no517_o18.b1 CHROMAT_FILE:
MSMg01no517_o18.b1 PHD_FILE: MSMg01no517_o18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:10 2005
         (659 letters)



>mm_chr1_68957479_68958537
          Length = 1059

 Score = 1251 bits (647), Expect = 0.0
 Identities = 647/647 (100%)
 Strand = Plus / Minus

                                                                       
Query: 13  gaattcagttattgcctttacaacatagatagtacttccttgtgttaagaagtatgttgc 72
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 gaattcagttattgcctttacaacatagatagtacttccttgtgttaagaagtatgttgc 800

                                                                       
Query: 73  ataatatacttacccattagcataataattcaaaatagaaatgcatatagcaacaaatgc 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ataatatacttacccattagcataataattcaaaatagaaatgcatatagcaacaaatgc 740

                                                                       
Query: 133 ctaaaatatgatcattggattttcactaaacccatgaacaacattttgtatgaactgcta 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ctaaaatatgatcattggattttcactaaacccatgaacaacattttgtatgaactgcta 680

                                                                       
Query: 193 aattaacacagattacttggagaaccgaagaattgtggttcctcttcaggcatgccatgg 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aattaacacagattacttggagaaccgaagaattgtggttcctcttcaggcatgccatgg 620

                                                                       
Query: 253 tattgaataactccaaaaagttctataagtgataactataataggaaacgtcacattctt 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tattgaataactccaaaaagttctataagtgataactataataggaaacgtcacattctt 560

                                                                       
Query: 313 tagagttcttacaaagatttgttaacccagaatcactatgaaaccaataatgttatattg 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tagagttcttacaaagatttgttaacccagaatcactatgaaaccaataatgttatattg 500

                                                                       
Query: 373 atgattttgttttttaaatttaatgtaagtaaaaaatagtcatgagtgtaatgtggatgt 432
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 atgattttgttttttaaatttaatgtaagtaaaaaatagtcatgagtgtaatgtggatgt 440

                                                                       
Query: 433 caaattctgcaaatattgcatgttgctgtgggtttatcatttatgattcagtgtaagtca 492
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 caaattctgcaaatattgcatgttgctgtgggtttatcatttatgattcagtgtaagtca 380

                                                                       
Query: 493 tgtgttatgttcctatttcaaagttgttccagtttatccaaggtttctttttgatggtgg 552
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgtgttatgttcctatttcaaagttgttccagtttatccaaggtttctttttgatggtgg 320

                                                                       
Query: 553 gtgagaaatagttattgtgggtgaaaggataattattccattaaaatacagttagacatt 612
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gtgagaaatagttattgtgggtgaaaggataattattccattaaaatacagttagacatt 260

                                                          
Query: 613 atcttggattggtagtaggcagtaagttctcctcttgggtctatgat 659
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 atcttggattggtagtaggcagtaagttctcctcttgggtctatgat 213


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space:   680801
Effective search space used:   680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no517_o18.g1 MSMg01no517_o18.g1 CHROMAT_FILE:
MSMg01no517_o18.g1 PHD_FILE: MSMg01no517_o18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:10 2005
         (638 letters)



>mm_chr1_68802364_68803401
          Length = 1038

 Score = 1234 bits (638), Expect = 0.0
 Identities = 638/638 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacatttagtaccttgtaaaagaatctcaaagatatgttttgatttttctcatgatttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacatttagtaccttgtaaaagaatctcaaagatatgttttgatttttctcatgatttag 260

                                                                       
Query: 61  aaatgaggcgttaaaaatgtccacaaatgctaggtatctatgcccttaggacctaatgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatgaggcgttaaaaatgtccacaaatgctaggtatctatgcccttaggacctaatgac 320

                                                                       
Query: 121 tcatgaggaaagaataaaaggaatgggtgaataaaaagagactggtgaggtattctatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatgaggaaagaataaaaggaatgggtgaataaaaagagactggtgaggtattctatta 380

                                                                       
Query: 181 gacttatgctgaaatttcttaaatgaattggagtttttcatcattttcaatcctaaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacttatgctgaaatttcttaaatgaattggagtttttcatcattttcaatcctaaagaa 440

                                                                       
Query: 241 ctcattttttcaggaatggcctactcagtttgatttttctgaatttccttatttttcttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcattttttcaggaatggcctactcagtttgatttttctgaatttccttatttttcttt 500

                                                                       
Query: 301 ttcactttttttagcacctgaacctgggttctttcacaagtgaagaatgactcacggaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcactttttttagcacctgaacctgggttctttcacaagtgaagaatgactcacggaga 560

                                                                       
Query: 361 cttcattgaaatttctttcacttctggcttggtagactatatacagctactcttggtggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttcattgaaatttctttcacttctggcttggtagactatatacagctactcttggtggc 620

                                                                       
Query: 421 tttgtgtcactttctctcattttcagaaaacacacacatgaacatacacacttgaacatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttgtgtcactttctctcattttcagaaaacacacacatgaacatacacacttgaacatg 680

                                                                       
Query: 481 tgtttacacacacacacacacacacatgtacataaaatataggtttaaagtctgaggata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtttacacacacacacacacacacatgtacataaaatataggtttaaagtctgaggata 740

                                                                       
Query: 541 tgactaattagaacaatgtcttactaatgtgtaaagcactagatatgatttgccaaaaat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgactaattagaacaatgtcttactaatgtgtaaagcactagatatgatttgccaaaaat 800

                                                 
Query: 601 tacccaaacattttgtaaaataggagttcagtctacac 638
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tacccaaacattttgtaaaataggagttcagtctacac 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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