NNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATCATAGATTTCCTCGTGCTTATTTAAAACACCTTGTTTTCTTCAT
GTCTTCAATCCTGTCTGACTCTTAGGTTCTTTCTGTCTCCTCTTTCTTGG
AATTTCCTGAGCCCTGAGGTGAGGTATTAATGGAGAGATCTCATTTATTA
CTGAGCATTGTAAGGTGTCTCATTCTCTGTATAACATCTGTTTGTATGCC
TCTTTCCTATTGTCAATTGTAGTAAATGGAAACTTTCCTGATGATGGCTC
AGCAAGGCACTGATCTATGACTATAGCAAAATGTTATAAAGAGAATTTTT
GTCACAACCTTTGTTTATTTTATTTTGTTGTTGCTATTGTTGTCTTATTC
AATAGTATTTGGTCCCTGGACTTTGATTATTGGTCACTCAAGAAGTGTTA
GATATGGATTCTATCTCCAGGAGTGGGCCATAATTTTATCAAATACTGGC
TAGTTACACTCTCAAGTTTTATTCTACCATTGTCCTAGGCAATGCACCCT
ATGTGTATTGTAGATAAAAGGAGTGTGGCTGGATTGGCATTGAATTTTCT
CATTTGATAGCATCTAGAGTATATTCCAAAGACACTAGTGTGCAAGGGTA
AAGGTTTTATGTAGGCAGCAGATTAAACTTTCCAATTTCAATGTGTTGTG
TGCTTGTTGTCTCCAGCAATGACACCTTCCTATCCACACTTGGAGAGCAG

NGGCAAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGACAAAAAAATGGAGCAAA
GACCTAAGGAAAGGGCATTCAGAAACCAGTCCACCTAGGGATCAAATTTA
GAAATGAATTTTTGGCATGCAAAACTTAATGTAATTAATTAAAGCAATTT
CTCTAATTCTGGTTAGTATTTTTATCACTTAAAGGTTTTAAAATTTCAAA
AAAAATCCAAAATATAAGTATAAGTATATTACAAAACTTCGATAATTCTC
ATTTTTTTCATTTGTGGTAGAACAAATTAAACCGCTCATTATTTATTCAA
TTACTAGCTTATTCATCATGCATTTATTTTAAACAGTCTATTGACTAGTT
TCCATACTTGACATTTCAGATCATATGGAGAGCAAACACAATTTTAGAGC
CTGAATTCTTGTGGTCCCATATTAGTTTACAACACAGATTGTTGGGGACT
ATTATAAATACAACATTACCATTGTCATATGATGTAAACAGAAAGAAGGT
AGGGTGTGGGGCTAGTTAAATGTGCAAGAATGAAACAAGGAATGAGAGAT
GTTCCAAACCTTCAGTTAGACAGGATGTGGACACAGGAATGCCACTCTAA
CAAAAAGGATTCAGGACCTGAGGATTGTGGCTCAGATTGCAGTAGAATTT
GATTTACTAATGAATTTAAAAAATGGATCTAATAATCTACATAATGCCTT
TACT

Query= MSMg01no518_l12.g1 MSMg01no518_l12.g1 CHROMAT_FILE:
MSMg01no518_l12.g1 PHD_FILE: MSMg01no518_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:12 2005
         (668 letters)



>mm_chr1_148981493_148982559
          Length = 1067

 Score = 1276 bits (660), Expect = 0.0
 Identities = 666/668 (99%), Gaps = 1/668 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agggacaaaaaaatggagcaaagacctaaggaaagggcattcagaaaccagtccacctag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932 agggacaaaaaaatggagcaaagacctaaggaaagggcattcagaaaccagtccacctag 873

                                                                       
Query: 61  ggatcaaatttagaaatgaatttttggcatgcaaaacttaatgtaattaattaaagcaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 ggatcaaatttagaaatgaatttttggcatgcaaaacttaatgtaattaattaaagcaat 813

                                                                       
Query: 121 ttctctaattctggttagtatttttatcacttaaaggttttaaaatttcaaaaaaaatcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 812 ttctctaattctggttagtatttttatcacttaaaggttttaaaatttc-aaaaaaatcc 754

                                                                       
Query: 181 aaaatataagtataagtatattacaaaacttcgataattctcatttttttcatttgtggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 aaaatataagtataagtatattacaaaacttcgataattctcatttttttcatttgtggt 694

                                                                       
Query: 241 agaacaaattaaaccgctcattatttattcaattactagcttattcatcatgcatttatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 agaacaaattaaaccgctcattatttattcaattactagcttattcatcatgcatttatt 634

                                                                       
Query: 301 ttaaacagtctattgactagtttccatacttgacatttcagatcatatggagagcaaaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ttaaacagtctattgactagtttccatacttgacatttcagatcatatggagagcaaaca 574

                                                                       
Query: 361 caattttagagcctgaattcttgtggtcccatattagtttacaacacagattgttgggga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 caattttagagcctgaattcttgtggtcccatattagtttacaacacagattgttgggga 514

                                                                       
Query: 421 ctattataaatacaacattaccattgtcatatgatgtaaacagaaagaaggtagggtgtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ctattataaatacaacattaccattgtcatatgatgtaaacagaaagaaggtagggtgtg 454

                                                                       
Query: 481 gggctagttaaatgtgcaagaatgaaacaaggaatgagagatgttccaaaccttcagtta 540
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ggactagttaaatgtgcaagaatgaaacaaggaatgagagatgttccaaaccttcagtta 394

                                                                       
Query: 541 gacaggatgtggacacaggaatgccactctaacaaaaaggattcaggacctgaggattgt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gacaggatgtggacacaggaatgccactctaacaaaaaggattcaggacctgaggattgt 334

                                                                       
Query: 601 ggctcagattgcagtagaatttgatttactaatgaatttaaaaaatggatctaataatct 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ggctcagattgcagtagaatttgatttactaatgaatttaaaaaatggatctaataatct 274

                   
Query: 661 acataatg 668
           ||||||||
Sbjct: 273 acataatg 266


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1067
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1057
Effective search space:   695506
Effective search space used:   695506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)