Query= MSMg01no518_l15.b1 MSMg01no518_l15.b1 CHROMAT_FILE:
MSMg01no518_l15.b1 PHD_FILE: MSMg01no518_l15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:13 2005
(656 letters)
>mm_chr1_81088336_81089392
Length = 1057
Score = 1236 bits (639), Expect = 0.0
Identities = 651/655 (99%), Gaps = 3/655 (0%)
Strand = Plus / Plus
Query: 4 gaattcctttcttttcgaattttggaatgagtactcagatcacctcatttgactgtttta 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcctttctttttgaattttggaatgagtactcagatcacctcatttgactgtttta 263
Query: 64 aaaccaatgtaagaagtatcccctaagataaaggcaaaagggaaattctcatgtctagtc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaaccaatgtaagaagtatcccctaagataaaggcaaaagggaaattctcatgtctagtc 323
Query: 124 agctaccgtttttactgtaggaagcaaatgtgcccccccccc-aattaatgaaacactac 182
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 324 agctaccgtttttactgtaggaagcaaatgtgcccccccccccaattaatgaaacactac 383
Query: 183 attagcaaaatgtctccaaacattgtgagtctggaagacagcacttgacttcagcaaagc 242
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 384 attagcaaaatgtctccaaacattgtgagtctggaagacagcacttgacttcagcaaa-c 442
Query: 243 -ggttctgacacagaggactacttaggctgattaccagtgtctctattccccgtgggtgc 301
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tggttctgacacagaggactacttaggctgattaccagtgtctctattccccgtgggtgc 502
Query: 302 cctcaggggatccatatgaggttatatttcctctttaaaagtgacagtcagaaatggaat 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cctcaggggatccatatgaggttatatttcctctttaaaagtgacagtcagaaatggaat 562
Query: 362 tagattaaatatggctccctttaaaggggcatatgattgtatatttgtgtgtgcacttga 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tagattaaatatggctccctttaaaggggcatatgattgtatatttgtgtgtgcacttga 622
Query: 422 aaactatgtggatttaagagtttcagatctcctgttatgcaaagggaatcaaaacaccac 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aaactatgtggatttaagagtttcagatctcctgttatgcaaagggaatcaaaacaccac 682
Query: 482 tccagtctctcttgtacatttagggagaaattttcaatacaaataaaaagtttaaattta 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tccagtctctcttgtacatttagggagaaattttcaatacaaataaaaagtttaaattta 742
Query: 542 tcttttatttgctattttactactatgccaaaaggaaatggttgtgatatcaaatttgta 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tcttttatttgctattttactactatgccaaaaggaaatggttgtgatatcaaatttgta 802
Query: 602 tatcaattcattttatttacataaactcatagttatacagagaatgcttatcagg 656
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tatcaattcattttatttacataaactcatagttatacagagaatgcttatcagg 857
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1057
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1047
Effective search space: 676362
Effective search space used: 676362
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no518_l15.g1 MSMg01no518_l15.g1 CHROMAT_FILE:
MSMg01no518_l15.g1 PHD_FILE: MSMg01no518_l15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:13 2005
(643 letters)
>mm_chr1_81252690_81253732
Length = 1043
Score = 1000 bits (517), Expect = 0.0
Identities = 556/569 (97%), Gaps = 2/569 (0%)
Strand = Plus / Minus
Query: 1 agtcgtaagccaactgtccatcctcttctctgcacttgtcagtgcaacaaaagattttgt 60
||||||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct: 568 agtcgtaagacaactgtctgtcctcttccctgcacttgtctgtgcaacaaaagattttgt 509
Query: 61 tcaccacgtttccccccagaatagtgttctctctgtgagagatataactccagtcttcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tcaccacgtttccccccagaatagtgttctctctgtgagagatataactccagtcttcat 449
Query: 121 ctcatttttaaagattgtcttacattgtgatgctcaaggaaaaaaataagaggaaattct 180
| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 448 cgcatttttaaaggttgtcttacattgtgatgctcaagg-aaaaaataagaggaaattct 390
Query: 181 aaatgacacttg-aaaaaaaagtttgagtttagcaataagacaggagcaacaaaagtaaa 239
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 389 aaatgacacttgaaaaaaaaagtttgagtttaacaataagacaggagcaacaaaagtaaa 330
Query: 240 taagttagaataaatgcaaactgggaaacataggaatgataggggacaatcagcaggatg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 taagttagaataaatgcaaactgggaaacataggaatgataggggacaatcagcaggatg 270
Query: 300 gaaggacaggcagtggagtgagagcactagttacaagcagccatggatctaataaggact 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gaaggacaggcagtggagtgagagcactagttacaagcagccatggatctaataaggact 210
Query: 360 taataccattctaggagctgaggagatggcccagtgaataagagcatttgctgtacaact 419
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 taataccatactaggagctgaggagatggcccagtgaataagagcatttgctgtacaact 150
Query: 420 aggaggacctgggttcaaatcctctgcactcatgtaaaatgctatgcaaggccattgatg 479
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 149 aggaggacctgggttcaaatcctctgcactcatgtaaagtgctatgcaaggccattgatg 90
Query: 480 cctgtaaccccagtgttaggaggaaagatgggggatttaagaagctggtcaaccaacctt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 cctgtaaccccagtgttaggaggaaagatgggggatttaagaagctggtcaaccaacctt 30
Query: 540 gctcaaacagttattctgagtcaatgaaa 568
||||||||||| |||||||||||||||||
Sbjct: 29 gctcaaacagtgattctgagtcaatgaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
