BAC Information

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BAC

Clone NameMSMg01-518L17
Chromosome1 (Build37)
Map Location 94,017,942 - 94,182,956
singlet/doubletdoublet
Overlap geneHdac4
Upstream geneLrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1, Twist2
Downstream geneLOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518L17.T7 (MSMg01no518_l17.b1)MSMg01-518L17.TJ (MSMg01no518_l17.g1)
ACCAG590171AG590172
length760773
length of high quality
(start - end)		659 (48 - 706)680 (76 - 755)
definitionCHROMAT_FILE: MSMg01no518_l17.b1 PHD_FILE: MSMg01no518_l17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:13 2005CHROMAT_FILE: MSMg01no518_l17.g1 PHD_FILE: MSMg01no518_l17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,017,942 - 94,018,599)(94,182,277 - 94,182,956)
sequence
GCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCG
GAATTCTAAAGAATGCCCTAGCAGGCTAGCTTAGAACTGAAAGGTAAGAC
ACACACAGGCCATCCATCGTACAGACCAGCAGCCAACCATCAAACAGAGA
CGTAGATACTTCAGACAAGAAGTACCTATACTTACAACCACCTACAGGAG
GCTAAAATCTGGCTGTGTTCACCAAATGCCCAGAGAGCTCCCTTTCAGCA
GCCCAATGGCTGTAGCTGACAGGGTGAGCCCAGACAATATGGTATGGCAA
GGGTGGGGGAGGGGTCCAAATACTGCTTATCTTCTACCATACACCACCTG
CACCTGAATCAGGAAACACAAAGAAGGCTCCCAACAGCACACTTACTAGT
AGACATGTTTGCAAATAAGCAGCACACCATTACAGGACAAAGAATATGTC
AGGAACATGCTTAAGGCAGATACTAACCAACAAGAAATGTTGACCTCAGA
TTCTGCACCTGAGCCTGGGTCTCATCAAGTTTTATCCAAAAGTCCTCACA
AGCTACAAAACATACACTATAATTCCATGTATGTCAAGTTTTTAAATGTG
TAACTCAAACAAAATAGTTTAGTAACATGTATGTACATGGTTTCAAATAT
TAAAAGCAGAAGCAAAGGGTCTTCTAGATGCTGATGGTGTATTGCTTTTT
TACATGGGGAAAATGAGAGTTGTGCATTTTTAATAGTATTTTATAATTAA
ATTTAAATAN

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGCATTCCATTTATACAAATCAAT
GAGCAGAGGGCTACCGTCAACCTTCGCTGCTTTATGGCTCATAAACACAG
GGCAGCCATACAAAGCACACGTTGAGAACAATCCTATTCACGGTGGCGGT
GAGCAGAGACAGACCTTTCATGGCGACTTAGAGTCCATGGAGAAGGACGG
GGGCAGCTGTAGACTGAGTCTTTTAAGCTACACGTGGGAGATTTTCAAAG
GCAGAGCCGAGCAAGAGGACAGAGTGATGAGTCCCAGGAGCCCCTCGCTG
GAGTCAATACGGACCAGCATCTGCTCCTCTTGCTTCGTCTAACTGCTCCA
CTTCTCCCAAAACCACATGTTACGATAAATGAACTGAAGACCCCAGTAAA
GGCGAACACACACGGATGGTAAATGCGAACGGTATAAAACTGACAGCAAC
GCTTAAATAAAATTTACTGCGGCGCTAATAAAGATTCCAGGAGGATTTTT
TACACTGTCAAAATAAGCCATTTATTTAGGCAGAAAAGTGAACACATTAA
AACTGCACGGAACCCTTTGAAAAAGAGGGCAGGCTTTATGAACTTGCATA
TTACATTATAAAGCCATAAAAGGCTCCATTAGGAATGGAGAAGCTTCTTT
TTAAATAATCTCAGTGTAAGGAAGGGCTTTTAAAGCCCATTATAAAAGCC
AGAAACAATTAAGAAAAATATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_l17.b1 MSMg01no518_l17.b1 CHROMAT_FILE:
MSMg01no518_l17.b1 PHD_FILE: MSMg01no518_l17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:13 2005
         (659 letters)



>mm_chr1_94017740_94018799
          Length = 1060

 Score = 1234 bits (638), Expect = 0.0
 Identities = 653/658 (99%), Gaps = 1/658 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggaattctaaagaatgcc-ctagcaggctagcttagaactgaaaggtaagacacacacag 61
           |||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattctaaagaaagcaactagcaggctagcttagaactgaaaggtaagacacacacag 262

                                                                       
Query: 62  gccatccatcgtacagaccagcagccaaccatcaaacagagacgtagatacttcagacaa 121
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gccatccatcctacagaccagcagccaaccatcaaacagagacgtagatacttcagacaa 322

                                                                       
Query: 122 gaagtacctatacttacaaccacctacaggaggctaaaatctggctgtgttcaccaaatg 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gaagtacctatacttacaaccacctacaggaggctaaaatctggctgtgttcaccaaatg 382

                                                                       
Query: 182 cccagagagctccctttcagcagcccaatggctgtagctgacagggtgagcccagacaat 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cccagagagctccctttcagcagcccaatggctgtagctgacagggtgagcccagacaat 442

                                                                       
Query: 242 atggtatggcaagggtgggggaggggtccaaatactgcttatcttctaccatacaccacc 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 atggtatggcaagggtgggggaggggtccaaatactgcttatcttctaccatacaccacc 502

                                                                       
Query: 302 tgcacctgaatcaggaaacacaaagaaggctcccaacagcacacttactagtagacatgt 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgcacctgaatcaggaaacacaaagaaggctcccaacagcacacttactagtagacatgt 562

                                                                       
Query: 362 ttgcaaataagcagcacaccattacaggacaaagaatatgtcaggaacatgcttaaggca 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttgcaaataagcagcacaccattacaggacaaagaatatgtcaggaacatgcttaaggca 622

                                                                       
Query: 422 gatactaaccaacaagaaatgttgacctcagattctgcacctgagcctgggtctcatcaa 481
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 623 gatactaaccaacaagaaatgttgacctcagattctacacctgagcctgggtctcatcaa 682

                                                                       
Query: 482 gttttatccaaaagtcctcacaagctacaaaacatacactataattccatgtatgtcaag 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gttttatccaaaagtcctcacaagctacaaaacatacactataattccatgtatgtcaag 742

                                                                       
Query: 542 tttttaaatgtgtaactcaaacaaaatagtttagtaacatgtatgtacatggtttcaaat 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tttttaaatgtgtaactcaaacaaaatagtttagtaacatgtatgtacatggtttcaaat 802

                                                                     
Query: 602 attaaaagcagaagcaaagggtcttctagatgctgatggtgtattgcttttttacatg 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 attaaaagcagaagcaaagggtcttctagatgctgatggtgtattgcttttttacatg 860


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1060
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1050
Effective search space:   681450
Effective search space used:   681450
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no518_l17.g1 MSMg01no518_l17.g1 CHROMAT_FILE:
MSMg01no518_l17.g1 PHD_FILE: MSMg01no518_l17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:13 2005
         (680 letters)



>mm_chr1_94182077_94183156
          Length = 1080

 Score = 1299 bits (672), Expect = 0.0
 Identities = 678/680 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgcattccatttatacaaatcaatgagcagagggctaccgtcaaccttcgctgctttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 ttgcattccatttatacaaatcaatgagcagagggctaccgtcaaccttcgctgctttat 821

                                                                       
Query: 61  ggctcataaacacagggcagccatacaaagcacacgttgagaacaatcctattcacggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 ggctcataaacacagggcagccatacaaagcacacgttgagaacaatcctattcacggtg 761

                                                                       
Query: 121 gcggtgagcagagacagacctttcatggcgacttagagtccatggagaaggacgggggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 gcggtgagcagagacagacctttcatggcgacttagagtccatggagaaggacgggggca 701

                                                                       
Query: 181 gctgtagactgagtcttttaagctacacgtgggagattttcaaaggcagagccgagcaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 gctgtagactgagtcttttaagctacacgtgggagattttcaaaggcagagccgagcaag 641

                                                                       
Query: 241 aggacagagtgatgagtcccaggagcccctcgctggagtcaatacggaccagcatctgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 aggacagagtgatgagtcccaggagcccctcgctggagtcaatacggaccagcatctgct 581

                                                                       
Query: 301 cctcttgcttcgtctaactgctccacttctcccaaaaccacatgttacgataaatgaact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 cctcttgcttcgtctaactgctccacttctcccaaaaccacatgttacgataaatgaact 521

                                                                       
Query: 361 gaagaccccagtaaaggcgaacacacacggatggtaaatgcgaacggtataaaactgaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gaagaccccagtaaaggcgaacacacacggatggtaaatgcgaacggtataaaactgaca 461

                                                                       
Query: 421 gcaacgcttaaataaaatttactgcggcgctaataaagattccaggaggattttttacac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gcaacgcttaaataaaatttactgcggcgctaataaagattccaggaggattttttacac 401

                                                                       
Query: 481 tgtcaaaataagccatttatttaggcagaaaagtgaacacattaaaactgcacggaaccc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tgtcaaaataagccatttatttaggcagaaaagtgaacacattaaaactgcacggaaccc 341

                                                                       
Query: 541 tttgaaaaagagggcaggctttatgaacttgcatattacattataaagccataaaaggct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tttgaaaaagagggcaggctttatgaacttgcatattacattataaagccataaaaggct 281

                                                                       
Query: 601 ccattaggaatggagaagcttctttttaaataatctcagtgtaaggaagggcttttaaag 660
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 280 ccattaggaatggagaagcttctttttaaataatctcagtataaggaagggctttttaag 221

                               
Query: 661 cccattataaaagccagaaa 680
           ||||||||||||||||||||
Sbjct: 220 cccattataaaagccagaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space:   716900
Effective search space used:   716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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