BAC Information

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BAC

Clone NameMSMg01-519I08
Chromosome1 (Build37)
Map Location 59,044,956 - 59,045,622
singlet/doubletsinglet
Overlap geneAls2cr2
Upstream geneSgol2, Aox1, Aox3, Aox4, Aox3l1, EG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806, Ndufb3, EG667397, Als2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2
Downstream gene4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2, Als2cr7, Fzd7, Gm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519I08.T7 (MSMg01no519_i08.b1)MSMg01-519I08.TJ (MSMg01no519_i08.g1)
ACCAG590774AG590775
length571725
length of high quality
(start - end)		---656 (68 - 723)
definitionCHROMAT_FILE: MSMg01no519_i08.b1 PHD_FILE: MSMg01no519_i08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:15 2005CHROMAT_FILE: MSMg01no519_i08.g1 PHD_FILE: MSMg01no519_i08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCATACACCCCTCTTCCCCTCTTTCAATCGTTTTTTACCCTTCTTTTCCC
CACAGCCTTCTTATGTTACTTCTTTCACTTTTATTCTTTCTACTCCTTTC
CCCCTTTTTTATTAGNCAATTTCTTTTTGTCCCCCANCACNTTTCCCTAT
TTTTCNNTTAAAAAAAAAAANTAGTATTAACTATAAATTACATCCATTCA
ATCCANNAAGAGGNGGNGGGGGGGGCCTATAATTGCGGCCCCTATCGACT
CCTATAGGANAGATCCCCGNATTCAACATCTCAAGACAATCTGTTTCTCT
CTTTGTGCTTGTGCTCTACTATAGCTACATAGATGCCTTTATTTGACCAA
AAACGAATTTACCTTTTTTAAAGCCAAAATAATTCCAAATTTGGGGAACC
GAAATTAATTCCTTTACCATTGGATTTTCCTTCCTTTAAAACCTTTAAAC
CCCCTTTTTTTTTTAAAAAAATTCAAGCTTTTTTTTTTTTCCCCCAAAAA
AAAAAAAACCCCCATTTTTCCTTTTTAAAACACCCCCTTTTCTCAAAAGT
TTTTCCTCTAAAAAAATAAAA

GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXGCATCTGCTTTCACGTGTTCTTCCCAATCTGGT
AACTGCATGACTTAGTTAAATTTACTTTCTTTAACAGAACTATCAGTTGG
GGACAGAAAATTTCACAATCCTCTCAAACAGACATCCCAGCCAACACTTC
CTTCCTTTGTCTCATTACCTGTAAAGCTTTCAGACGTTCTTCAGTGCAGC
TTTCCAGGTTTGTAATCTTTACAGTTACCAGTGTTCCTGTAGGAGTGTGC
CGTGCAAGATGAACAGAGGTCAAGTTGTCAAACCCTCTTCCTGCAGTCGC
ACAGAAAATCCATGGTAACAGTCAGAGCAGGAAAAAAGTGGACACTGTCC
ACTTCAGCAAAATATGAAACTCCCTGCTGTTCCAAAACTACTAAGAAAAT
GAAAAGGCTCAGGTATCCTCAGCACCACAGTGACATCCATGACTCTATAA
CTCACTCTCCACATTTCAACCCAGGCCATTCCCAGCTACTCAAGAGAGAG
GCCATTACTACCCAGTTAGGGTAGTCAACACTGCTGCTCAGGGAGGTGGG
AGCTCCCGCATGTAGGAGATATAGCCTGCCTATCAGCAGTTCTCAATGGT
ACCAAGCTCAGGTCTCCACTCACATGACTCANATTGCCTGTTGGTACGTG
ATTCAGACATGACCCTTACTTCAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_i08.g1 MSMg01no519_i08.g1 CHROMAT_FILE:
MSMg01no519_i08.g1 PHD_FILE: MSMg01no519_i08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:15 2005
         (656 letters)



>mm_chr1_59044920_59045975
          Length = 1056

 Score = 1187 bits (614), Expect = 0.0
 Identities = 648/667 (97%), Gaps = 13/667 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcatctgctttcacgtgttcttcccaatctggtaactgcatgacttagttaaatttactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 gcatctgctttcacgtgttcttcccaatctggtaactgcatgacttagttaaatttactt 644

                                                                       
Query: 61  tctttaacagaactatcagttggggacagaaaatttcacaatcctctcaaacagacatcc 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 tctttaacagaactattagttggggacagaaaatttcacaatcctctcaaacagacatcc 584

                                                                       
Query: 121 cagccaacacttccttcctttgtctcattacctgtaaagctttcagacgttcttcagtgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 cagccaacacttccttcctttgtctcattacctgtaaagctttcagacgttcttcagtgc 524

                                                                       
Query: 181 agctttccaggtttgtaatctttacagttaccagtgttcctgtaggagtgtgccgtgcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 agctttccaggtttgtaatctttacagttaccagtgttcctgtaggagtgtgccgtgcaa 464

                                                                       
Query: 241 gatgaacagaggtcaagttgtcaaaccctcttcctgcagtcgcacagaaaatccatggta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gatgaacagaggtcaagttgtcaaaccctcttcctgcagtcgcacagaaaatccatggta 404

                                                                       
Query: 301 acagtcagagcaggaaaaaagtggacactgtccacttcagcaaaatatgaaactccctgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 acagtcagagcaggaaaaaagtggacactgtccacttcagcaaaatatgaaactccctgc 344

                                                                       
Query: 361 tgttccaaaactactaagaaaatgaaaaggctcaggtatcctcagcaccacagtgacatc 420
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 cgttccaaaactactaagaaaatgaaaaggctcaggtatcctcagcaccacagtgacatc 284

                                                                       
Query: 421 catgactctataactcactctccacatttcaacccaggccattcccagctactcaagaga 480
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 catgactctatacctcactctccacatttcaacccaggccattcccagctactcaagaga 224

                                                                       
Query: 481 gaggccattactacccagttagg---------gtagtca----acactgctgctcaggga 527
           |||||||||||||||||||||||          |||| |    |||||||||||||||||
Sbjct: 223 gaggccattactacccagttaggctacactaactagttaggttacactgctgctcaggga 164

                                                                       
Query: 528 ggtgggagctcccgcatgtaggagatatagcctgcctatcagcagttctcaatggtacca 587
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 ggtgggagctcccgcatgtaggagatatagcctgcctatcagcagttctcaatggtacca 104

                                                                       
Query: 588 agctcaggtctccactcacatgactcanattgcctgttggtacgtgattcagacatgacc 647
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 103 agctcaggtctccactcacatgactcaaattgcctgttggtacgtgattcagacatgacc 44

                  
Query: 648 cttactt 654
           |||||||
Sbjct: 43  cttactt 37


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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