Query= MSMg01no519_o03.b1 MSMg01no519_o03.b1 CHROMAT_FILE:
MSMg01no519_o03.b1 PHD_FILE: MSMg01no519_o03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:44 2005
(424 letters)
>mm_chr1_163188214_163189030
Length = 817
Score = 704 bits (364), Expect = 0.0
Identities = 407/424 (95%), Gaps = 7/424 (1%)
Strand = Plus / Plus
Query: 1 tgactggtggattgatagctcagaacttatttctttccctcccctcgcccccttgggttc 60
|||||||||||||||||| |||||||||||||| ||||||||| || |||||||||
Sbjct: 201 tgactggtggattgatagttcagaacttatttc--tccctcccc-cg----cttgggttc 253
Query: 61 tacttttgtatccctaagtgtgtagttggttcttagtagtaagcatctggtcgtcatttt 120
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 254 tacttttgtatccctaagtgtgtagttggttcttagtagtaagcatccggtcttcatttt 313
Query: 121 catctcatcttagttgagaaacaaacaaacaaaaagaccaaagcaaaggtgcaggtctca 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 314 catctcatcttagttgagaaacaaacaaacaaaaagaccaaagcaaaggtgcagatctca 373
Query: 181 tgcagacatagattctgccctgctgtatgccaggctcatctctgtgatcaatatccttgc 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 374 tgcagacatagattctgccctgctgcatgccaggctcatctctgtgatcaatatccttgc 433
Query: 241 aaaaaggtaactgggtagggtaggtgtttggttcatagacaaacatctccagtgaaggac 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 434 aaaaaggtaactgggtagggtaggtgtttggttcatcgacaaacatctccagtgaaggac 493
Query: 301 agacaatggaaggtacatgcttctgtttagaggccagagagggaatgccactggtattga 360
||||||||||||||||||||||||||||| ||||| ||||||||||| || |||||||||
Sbjct: 494 agacaatggaaggtacatgcttctgtttaaaggcctgagagggaatgtcagtggtattga 553
Query: 361 attcttatgtacagatagatttgtttaatatttcagcagagtttctggataacttgacat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 attcttatgtacagatagatttgtttaatatttcagcagagtttctggataacttgacat 613
Query: 421 ataa 424
||||
Sbjct: 614 ataa 617
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 817
Length adjustment: 9
Effective length of query: 415
Effective length of database: 808
Effective search space: 335320
Effective search space used: 335320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no519_o03.g1 MSMg01no519_o03.g1 CHROMAT_FILE:
MSMg01no519_o03.g1 PHD_FILE: MSMg01no519_o03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:44 2005
(591 letters)
>mm_chr1_163380386_163381377
Length = 992
Score = 849 bits (439), Expect = 0.0
Identities = 462/471 (98%), Gaps = 5/471 (1%)
Strand = Plus / Minus
Query: 1 tctttttagcttttcagcagtttgtaggtacacatggtccttgtctttaaggtgttcttg 60
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 468 tctttttagctttgcagcagtttgtaggtacacatgg-ccttgtctttaaggtgttcttg 410
Query: 61 agaccatggagactcaattaaaagttttattttagaaaataatcttttgagttctgttag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 agaccatggagactcaattaaaagttttattttagaaaataatcttttgagttctgttag 350
Query: 121 tctagatcaatagatatttatctgctaatatcagata--gtttgttgtgggcttcccgtg 178
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 349 tctagatcaatagatatttatctgctaatatcagataatgtttgttgtgggcttcccgtg 290
Query: 179 tgtcagcaaccggcataccacatggctccagccaggtgatctcaacttggtgggctctct 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tgtcagcaaccggcataccacatggctccagccaggtgatctcaacttggtgggctctct 230
Query: 239 gggctacaacttccgagtcacttggtggattgctgccaccagccccatgcaatgactgtc 298
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 gggctacaacttccaagtcacttggtggattgctgccaccagccccatgcaatgactgtc 170
Query: 299 tacccgacagtcagtcatcacaacacccagtaaaatcaaaactcttaagcttgtaattta 358
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 169 tacccgacagtcagccatcacaacacccagtaaaatcaaaactc--aagcttgtaattta 112
Query: 359 ccaatcagatttatgtatcaataaattctcaatttacaagatgccaatataataatttca 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 ccaatcagatttatgtatcaataaattctcaatttacaagatgccaatataataatttca 52
Query: 419 gaaccaattgataatgataaaagctttatcccaattattctaaccttatga 469
||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 51 gaaccaattgataatgataaaagctttgtcccaattattctaaccttatga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 992
Length adjustment: 10
Effective length of query: 581
Effective length of database: 982
Effective search space: 570542
Effective search space used: 570542
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
