Query= MSMg01no520_p09.b1 MSMg01no520_p09.b1 CHROMAT_FILE:
MSMg01no520_p09.b1 PHD_FILE: MSMg01no520_p09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:09 2005
(286 letters)
>mm_chr1_71778333_71779018
Length = 686
Score = 514 bits (266), Expect = e-150
Identities = 279/284 (98%), Gaps = 3/284 (1%)
Strand = Plus / Plus
Query: 1 ccccagctctagacctaatttacccatggggtgggaccagattgacccactcctgggatg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 ccccagctctagacctaatttacccatggggtgggaccagattgacccactcctgggaag 260
Query: 61 cagaagtctgctacctgacaatgagtgttccaggctctgccatattgcaggaagctgtca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaagtctgctacctgacaatgagtgttccaggctctgccatattgcaggaagctgtca 320
Query: 121 ccctgctgctcaataaaaaccttgccttctcagcctcctgccattcctccccatcctgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccctgctgctcaataaaaaccttgccttctcagcctcctgccattcctccccatcctgag 380
Query: 181 gcagtgaactcaattcggaggcttagcatgacaatgctaatattcttttccttctattcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagtgaactcaattcggaggcttagcatgacaatgctaatattcttttccttctattcc 440
Query: 241 tcttcctcctcttctcttctcttctcttctcttc-tcttctctt 283
||||||||||| ||||||||||||||| ||||| |||||||||
Sbjct: 441 tcttcctcctc--ctcttctcttctcttttcttcctcttctctt 482
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no520_p09.g1 MSMg01no520_p09.g1 CHROMAT_FILE:
MSMg01no520_p09.g1 PHD_FILE: MSMg01no520_p09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:09 2005
(673 letters)
>mm_chr1_71931230_71932297
Length = 1068
Score = 1151 bits (595), Expect = 0.0
Identities = 652/673 (96%), Gaps = 5/673 (0%)
Strand = Plus / Minus
Query: 1 ttttaagggatagaaattgaaaagacagtcacgcatggttgggtgaaatgagacccaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 ttttaagggatagaaattgaaaagacagtcacgcatggttgggtgaaatgagacccaaga 809
Query: 61 acagagattattcacgtagctgaggtctcttcaacagaggagttagaagccccagctctg 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 acagagattattcacttagctgaggtctcttcaacagaggagttagaagccccagctctg 749
Query: 121 ctgcagtaccaatgttattttgacagaacaaatgatacctgctatggagtcttctcatgc 180
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 748 ctgcagtaccaatgttattttgacagaacaaatgatacatgttatggagtcttctcatgc 689
Query: 181 tacagtagatcttacttgtttattgctctaactggtggcacaaatctgggagagtggtgc 240
|| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 688 tatagtagatcttgcttgtttattgctctaactggtggcacaaatctgggagagcggtgc 629
Query: 241 ctaaaaacgaggccagctgaagtctcaggcaatggccaactttagtcagagcatcagaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ctaaaaacgaggccagctgaagtctcaggcaatggccaactttagtcagagcatcagaca 569
Query: 301 atttatcttctggggggttgaaaagagtcccctgggttacaatcacaagggcaagctgca 360
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 568 atttatcttctggggggttgaaaagagtcccctgtgttacaaccacaagggcaagctgcg 509
Query: 361 tgtggcaaaacatgatctttcatagaggcatataaacaaacgaccagctgtaatgaataa 420
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 508 tgtggcaaaacatgatctttcatagaggcatataaacaaacggccagctgtaatgaataa 449
Query: 421 tctgaagtaaactcactcccatcccatatacctgggagtcgcttgaatgcactttccaag 480
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 448 tctgaagtaaac-cactcccatcccatatacctgggaggcgcttgaatgcactttccaag 390
Query: 481 aaccaccggtgttatggagaaagagatcacaagactcttgtttacttggacttttctcct 540
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 389 aaccacaggtgttatggagaaagagatcacaagactcttgtttactcggacttttctcct 330
Query: 541 aaggcctcagaaatctcacacagcttcatttatggaccatgttcctgctaagtaaaaaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 329 aaggcctcagaaatctcacacagcttcatttatggaccatgttcctgctaagt----aaa 274
Query: 601 aaaatgttacttttattaatttgtatccctttggcttccaagccccaggaccagtttgta 660
| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 273 ataatgttacgtttattaatttgtatccctttggcttccaagctccaggaccagtttgta 214
Query: 661 tttgttatttgtt 673
|||||||||||||
Sbjct: 213 tttgttatttgtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1068
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1058
Effective search space: 701454
Effective search space used: 701454
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
