BAC Information

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BAC

Clone NameMSMg01-521A15
Chromosome1 (Build37)
Map Location 168,039,237 - 168,039,780
singlet/doubletsinglet
Overlap geneDusp27
Upstream geneTbx19, Sft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1, Creg1, Cd247, Pou2f1, LOC665409
Downstream geneGpa33, Mael, LOC100039795, Tada1l, Pogk, LOC100040287, EG226601, EG226604, 4831428F09Rik, LOC240895, LOC622102, C030014K22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521A15.T7 (MSMg01no521_a15.b1)MSMg01-521A15.TJ (MSMg01no521_a15.g1)
ACCAG591927AG591928
length752808
length of high quality
(start - end)		572 (164 - 735)223 (76 - 298)
definitionCHROMAT_FILE: MSMg01no521_a15.b1 PHD_FILE: MSMg01no521_a15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:15 2005CHROMAT_FILE: MSMg01no521_a15.g1 PHD_FILE: MSMg01no521_a15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCATAATTTGGGGCGCTAATCGACTCCTATTTCGAGAGGATCCGCGGAT
TCAAGAGCTTTTACCCAAGCTTAAAAGGAGAAAAAGACCAAACAAGGTCT
AGCGTTCAGGGCCCTTTCTTTTGTAAGTGGAGCTCATTTTGAAAAGCCCC
CGAGGACAGCTCTGCTCAAAGAACTGCAGGGGCCTTTAGCTAAGGGTATC
TGGAGATGGCTGGTGAACACGGAGCGAGTGCTTCTGGACCTGGACATCTA
GTTAGAAGTCACTTAGGTCCTGATGATCTGGGAATCAGGTTCTGGGCAAC
TGATCAACTCCGTCACAGAGTGTAAGACCCAGTATCCTACGTTGCCTGCC
CCGGGGCCCTACCTCCATTTTTCCATTCTGGATCTAAGGGTAATTGCATC
AGGAAGATGTCTCATTAAGTAGCCAATGAATCAGCAAAAATCAGTTTCTC
AAAATAGCCTACTGGTACCAATTATGCACCAAGAAGACCCTGAAGAGATG
CAATATGCTGGCTTCTTGTCTTTACTTCAGCAGGTACTGGTTAACTTAAA
ACCCAAGTTTTGTGATTATAAGAACAGTGTCTGGGAGACCTGTATATTCC
AAAAGAAACCCAAAGGAGAGAACAAAACCACCTCTTGGGACTATTAACAT
TCTATCACATTTCTTTCTATGTGAGGTTTATGAGAATGTATACACACACA
CACACACACACACACACACACACACACACTATTGTGTACATTTTCATTGT
TG

TTACTTGAACGCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGGCAGTCAAGCTTCCTCTGAGAC
CCTGAGATCCTGGTGTGACCAAGCTCCTGGGATCCTAATATCCTGGGTGT
GTTAGAGTGCCCCTGTGGTACTTCCTCTGGGACCTCGGGGCTGTCTGCTG
AGTTCGATACCAAGGTAGACCAGTGCTGAAGGAAGGAACCCAAACCTCTG
ATCGGGTGGGGCTCCTGTGTCCCTGCCCCTACTGTCTCCAGACACTCCCT
TTTCTGTTGGAATAGATGTTGTGTTCCACTCACCAATGATCCTAATATCC
TGGGCGCGCTATTGTGCCTGGATACCGGATAGTCCTCTGGGTACTGTGTG
ACTGACTATCTGTCGAGTCTGAGTTCTTATGTGTTTCTACTTTTCTCCAT
CTTTTTCCCCTTTATTTCATTGTTTTTCATTTTCGATTTGTTCTTATGTT
TCCCCCTTGTTCTAAAGTAACAGGTTACTCACTTCTTTTTTTCTATTTTT
TTCCAACTATACTCATGCCTTTATTCTCCCTCCCTTTTTTTTTCACCCCT
TTGTCTTTTTTTTTTATTTTTGTTTCTTTTCTCTCTTTATTTTTTTCTTT
TTCTCCCTTCTAATTTATTTGAAAGACTCTTTTTTTGTTTGCCATCACCT
GTTTTTATGCCTTTATTCTTTTTTTTTGTCCTTTCTTATTACTCTTTCTC
TCTTTCTTATCTTCCCTCTCTATTCTCCCTTCTACTGCCTTTTTTTCTTT
TTACTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_a15.b1 MSMg01no521_a15.b1 CHROMAT_FILE:
MSMg01no521_a15.b1 PHD_FILE: MSMg01no521_a15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:15 2005
         (572 letters)



>mm_chr1_168039037_168040008
          Length = 972

 Score =  990 bits (512), Expect = 0.0
 Identities = 536/544 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctcaaagaactgcaggggcctttagctaagggtatctggagatggctggtgaacacgga 60
           |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 gctcaaagaactgcagaggcctttggctaagggtatctggagatggctggtgaacacgga 260

                                                                       
Query: 61  gcgagtgcttctggacctggacatctagttagaagtcacttaggtcctgatgatctggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcgagtgcttctggacctggacatctagttagaagtcacttaggtcctgatgatctggga 320

                                                                       
Query: 121 atcaggttctgggcaactgatcaactccgtcacagagtgtaagacccagtatcctacgtt 180
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 321 atcaggttctgggcaactgatcaactccatcacagagtgtaagacccagtatcctatgtt 380

                                                                       
Query: 181 gcctgccccggggccctacctccatttttccattctggatctaagggtaattgcatcagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctgccccggggccctacctccatttttccattctggatctaagggtaattgcatcagg 440

                                                                       
Query: 241 aagatgtctcattaagtagccaatgaatcagcaaaaatcagtttctcaaaatagcctact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagatgtctcattaagtagccaatgaatcagcaaaaatcagtttctcaaaatagcctact 500

                                                                       
Query: 301 ggtaccaattatgcaccaagaagaccctgaagagatgcaatatgctggcttcttgtcttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtaccaattatgcaccaagaagaccctgaagagatgcaatatgctggcttcttgtcttt 560

                                                                       
Query: 361 acttcagcaggtactggttaacttaaaacccaagttttgtgattataagaacagtgtctg 420
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acttcagcaggcgctggttaacttaaaacccaagttttgtgattataagaacagtgtctg 620

                                                                       
Query: 421 ggagacctgtatattccaaaagaaacccaaaggagagaacaaaaccacctcttgggacta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggagacctgtatattccaaaagaaacccaaaggagagaacaaaaccacctcttgggacta 680

                                                                       
Query: 481 ttaacattctatcacatttctttctatgtgaggtttatgagaatgtatacacacacacac 540
           |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 681 ttaacattctatcacatttctttctacgtgaggtttatgagaatgcatacacacacacac 740

               
Query: 541 acac 544
           ||||
Sbjct: 741 acac 744


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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