BAC Information

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BAC

Clone NameMSMg01-521A17
Chromosome1 (Build37)
Map Location 3,385,789 - 3,386,136
singlet/doubletsinglet
Overlap geneXkr4
Upstream genenone
Downstream geneLOC100038975, LOC664792, LOC619785, Rp1h
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521A17.T7 (MSMg01no521_a17.b1)MSMg01-521A17.TJ (MSMg01no521_a17.g1)
ACCAG591931AG591932
length763786
length of high quality
(start - end)
621 (84 - 704)348 (78 - 425)
definitionCHROMAT_FILE: MSMg01no521_a17.b1 PHD_FILE: MSMg01no521_a17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:16 2005CHROMAT_FILE: MSMg01no521_a17.g1 PHD_FILE: MSMg01no521_a17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
TTCTCTGTTTAGCTCTGTACATTTTAATTGGGTTATTTGTGTTGTTGGTG
TCTAACTTCTTGAGTTCTTTATACATTTTGGATATTAGCCCTCTATCAGA
TGTACAGTTGGTGAAGAGCCTTTCTCAAAAGCTGCTGTTTTGTTCTATTG
ACAGTATCTTTGCCTTACAAAAGCTTTTTCATTTCATAAGGTCCCATTTA
TCAATTGTTTATCTTAGATCTTGAGACTTTGGTGTTCTATTCAGGAAGTT
GTCTTCTATACCAGTGAGTTCAAGCCTATTCCCCATCTTCTATTCTATTA
GATTTAGTGTATCTAGATTTATGTTGAGTTCTTTGATCTATTAGGACTTG
AATTTTGTACACAGTAATAGATATGATCTATTCATTTGCAAGTACTTTAT
TGAGAATTTTTGCATTTATTCTCATAATGGAAACTACCCTATAATTATCT
TTCTTTGTTGTGTTTTACATAGTTTAGTTATCAGTATAATTGTGACCTCA
TAAAATAAATTGTCCCTCCTTTTTCTATTCTGTGGAATAATTTGAGAAGT
ATTAACACTATCTCTTCTTTGTAAATCTGGTAGAATTCTGTGTTGAATCC
ATCTAACATGGGCCTTTGCTTGTTGGGAGAATTTTAATTACTATTTCTAG
TTCACTAGGGATAGTGGATCTGTTTAAATTGCTTATCTGGTGNTGATTTC
ACTTTTGGAGGTG
ACCTATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATTAAAGACACGCCATAGTTTG
AGTTCTCCCAAAATATCAAATGTCAGCATCAGCCAAATAAAACAGCCTCT
CTGGAGGTCTAGGATGAGGCAAGTTGAAAAAGGCATCTCTAGTAATGTCA
GGAAGATTTGCAGAATAACTCTTTACTAGCTGTATTCAGAATTTGCAAAC
TATTTACATTTTTTAAAGTATTTCACCATGGAAATAACAGCTAACAGGAA
GACAAAGCAAGTGTCTACTTCTGACTCTTATTTGAACTGTCCCTTTGTTC
TGGTGTCTAATCCTCTGAGTCTCGGCTTTTGTTTGGGAAAGGTGGATAAG
AATCTATTTTGCCCACATGCTAGAAAGAAGGTTGTATGAAATGAATACAG
AGTCTTTACCAAGATATGGTTTAATAGAAATGTTCTTTTGCTGGGCCTCC
ACTTATTCCTGCATCTCTTTTAAAGCATTCACAACTTATTCTAATAGTTA
AAATAAGAATACTCTCTCATTGATACTAAATTACCTTTTCTTTGCCTTGT
GCACTAAATTTTATAACCATTTCTAATTTTGAGAGGAGCCTACTTAGGAT
TATAATTTTGTCTTTCTATTACCCACCACGGTGATAATGGTTAGATCCTT
AATATTCTTGAATTCCACCCATAACTCCGTAAGAATTTTAAACCTTTTGT
CTTTCTCCTCCTCATATGTTGTTCGTTTTCCGAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_a17.g1 MSMg01no521_a17.g1 CHROMAT_FILE:
MSMg01no521_a17.g1 PHD_FILE: MSMg01no521_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:16 2005
         (348 letters)



>mm_chr1_3385589_3386336
          Length = 748

 Score =  642 bits (332), Expect = 0.0
 Identities = 344/348 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattaaagacacgccatagtttgagttctcccaaaatatcaaatgtcagcatcagccaaa 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 cattaaagacacgccatagtttgagttctcccaaaatagcaaatgtcagcatcagccaaa 260

                                                                       
Query: 61  taaaacagcctctctggaggtctaggatgaggcaagttgaaaaaggcatctctagtaatg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 taaaacagcctctctggaggtctaggatgaggcaagttgaaaaaggcatctctaataatg 320

                                                                       
Query: 121 tcaggaagatttgcagaataactctttactagctgtattcagaatttgcaaactatttac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaggaagatttgcagaataactctttactagctgtattcagaatttgcaaactatttac 380

                                                                       
Query: 181 attttttaaagtatttcaccatggaaataacagctaacaggaagacaaagcaagtgtcta 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttttttaagtatttcaccatggaaataacagctaacaggaagacaaagcaagtgtcta 440

                                                                       
Query: 241 cttctgactcttatttgaactgtccctttgttctggtgtctaatcctctgagtctcggct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttctgactcttatttgaactgtccctttgttctggtgtctaatcctctgagtctcggct 500

                                                           
Query: 301 tttgtttgggaaaggtggataagaatctattttgcccacatgctagaa 348
           |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 tttgtttgggaaaggtggataagaatctatattgcccacatgctagaa 548


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)