TCCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAATGAGGTCTTTAATGAAATTCCTCCTTCCAGTGGAGGAAGTC
ACTGACCTGGAACAAGATCACTTTGAACATGACACCATTACATAAGTGGT
AGCATCTATTTTCAGATAGCCACTTTTTAAAAAGCAGTTACGAATGTATT
CCAAAGAATAAAATGCAAGCTGGTAGGTTTTTGAAAACAGAATAAAGATG
ATACAGAGTTACTGGAGGATGAGCATCCTTTGGCTGATGTTTCTGAGGCA
GTTTGCTCTGGACAGTCTAGCAATGAAGGTAGTCGGTGATTCTTAATGTC
ACCAGGGCCACTGCAGTGGCTTTATTAAAAAGAAGGAGAAAAGGAGGGCA
GATGGAAGACAGAACTTCAGTCCTAGAAGACTTCAATTAGGTATTGATTT
CATCCATGAAGCATCCAAAAGTTGGGTAATTGGTTTGTAAAAAAAAAAAA
AATTGCTGTGTTCCAATGGGTCATTTGGATAAACAGCTAATACCATGTTT
TATCAGCTTATGTCTTAGGCAAACATCCCACTTCTTAATTCTTTCTTTCT
TAACATTTTTAAATGCATGTATAAGAGTTCTATGCACTTATGTACTACAG
TGTGATATACAATGTGGAATGATCAAATCAATATGGTTAGCATTCCATAT
TCCTACACATTTGTAAGTCCATCTTGTCAGTAAGAGGGTGCCTGTGTATT
N

TCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCAT
TTTTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTT
ATATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCC
TTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCC
TTGCAGAAACTTTGGAGTTTCATGAGGTCCCATTTGTCAATTCTCGATCT
TACAGTACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCA
TATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCT
GGTTTTATGTGAAGTTCCTTGATCCACTTAGATTTGACCTTAGTACAAGG
AGATAAGTATGGATCGATTCGCATTCTTCTATACGATAAAAACCAGTTGT
GCCAGCACCAATTGTTGAAAATGTTGTCTTTCTTCCAATAGATGGTTTTA
ACTCCCTTGTCGAAGATCAAGTGACCATAGGTGTGTGGGTTAATTTCTGG
GTCTTCAATTCTATTCCATTGGTCTACTTGTCTGTCTCTATACCAGTACC
ATGCAGTTTTTATCACAATTGCTCTGTAGTAAAGCTTTAGGTCAGGCATG
GTGATTCCACCAGAGGTTCTTTTATCCTTGAGAAGACTTTTTGCTATCCT
AGGTTTTTTGG

Query= MSMg01no521_c13.b1 MSMg01no521_c13.b1 CHROMAT_FILE:
MSMg01no521_c13.b1 PHD_FILE: MSMg01no521_c13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:24 2005
         (678 letters)



>mm_chr1_3385143_3386220
          Length = 1078

 Score = 1143 bits (591), Expect = 0.0
 Identities = 617/629 (98%), Gaps = 6/629 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaattcctccttccagtggaggaagtcactgacctggaacaagatcactttgaacatgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aaattcctccttccagtggaggaagtcactgacctggaacaagatcactttgaacatgac 564

                                                                       
Query: 61  accattacataagtggtagcatctattttcagatagccactttttaaaaagcagttacga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 accattacataagtggtagcatctattttcagatagccactttttaaaaagcagttacga 504

                                                                       
Query: 121 atgtattccaaagaataaaatgcaagctggtaggtttttgaaaacagaataaagatgata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 503 atgtattccaaagaataaaatgcaagctggtaggtttttgaaaacagaataaagatggta 444

                                                                       
Query: 181 cagagttactggaggatgagcatcctttggctgatgtttctgaggcagtttgctctggac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cagagttactggaggatgagcatcctttggctgatgtttctgaggcagtttgctctggac 384

                                                                       
Query: 241 agtctagcaatgaaggtagtcggtgattcttaatgtcaccagggccactgcagtggcttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 agtctagcaatgaaggtagtcggtgattcttaatgtcaccagggccactgcagtggcttt 324

                                                                       
Query: 301 attaaaaagaaggagaaaaggagggcagatggaagacagaacttcagtcctagaagactt 360
           ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 323 attaaaaaggaggagaaaaggagggcagatggaagacagaacttcagttctagaagactt 264

                                                                       
Query: 361 caattaggtattgatttcatccatgaagcatccaaaagttgggtaattggtttgtaaaaa 420
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||     
Sbjct: 263 caattaggtattgattacatccatgaagcatccaaaagttgggtaattggtttgt----- 209

                                                                       
Query: 421 aaaaaaaaattgctgtgttccaatgggtcatttggataaacagctaataccatgttttat 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 208 -aaaaaaaattgctgtgttccaatgggtcatttggataaacagctaataccaagttttat 150

                                                                       
Query: 481 cagcttatgtcttaggcaaacatcccacttcttaattctttctttcttaacatttttaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 cagcttatgtcttaggcaaacatcccacttcttaattctttctttcttaacatttttaaa 90

                                                                       
Query: 541 tgcatgtataagagttctatgcacttatgtactacagtgtgatatacaatgtggaatgat 600
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89  tgcatgtataagagttttatgcacttatgtactacagtgtgatatacaatgtggaatgat 30

                                        
Query: 601 caaatcaatatggttagcattccatattc 629
           |||||||||||||||||||||||||||||
Sbjct: 29  caaatcaatatggttagcattccatattc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space:   713424
Effective search space used:   713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)