BAC Information

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BAC

Clone NameMSMg01-521F02
Chromosome1 (Build37)
Map Location 68,228,897 - 68,394,997
singlet/doubletdoublet
Overlap geneErbb4
Upstream geneCps1, Kif22-ps
Downstream geneLOC667842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521F02.T7 (MSMg01no521_f02.b1)MSMg01-521F02.TJ (MSMg01no521_f02.g1)
ACCAG592141AG592142
length733740
length of high quality
(start - end)		681 (50 - 730)658 (80 - 737)
definitionCHROMAT_FILE: MSMg01no521_f02.b1 PHD_FILE: MSMg01no521_f02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:37 2005CHROMAT_FILE: MSMg01no521_f02.g1 PHD_FILE: MSMg01no521_f02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,228,897 - 68,229,574)(68,394,340 - 68,394,997)
sequence
NNNNAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGGTGGCACAGCACACATTCCTTTTGCACTGGAATAATAAC
AGAATAAATACAGCCTAACAGCCTAAGAACAAAGTGTTTCTATCCTCACT
TGCTTGGTGCTTTGGTGCCATATTTAACATAACTCTCTCAATCTTTCCTT
TGTGAATATGCTTCTCCTTAAAGAGATATGGTTGCTTCTGTTTTCAAGAT
GTTGTACACCTTACTTTAAACCCCATGTGTCAGAGAGGGGAGAAAATTCA
GGATATCGATAGAAAGACTTAGAAGAGATGGAAAGAAGTGACCAGATGGA
ATGAAGAAGAGTCACTGCTTTCATGGTCTGACTAGTGCAAGGTGGCAGTG
AGAGTCAGCAGATGAAATGGTCTCCTGGACCACAAACTCTGCAACTCAAT
ATTCTGGTCAGGTCCCACTGTGTCTTTCCATCCCTGAGTCTCAGAAAAAT
GGATATCTGAGTTCAATCCATTGGGATGAAGTCTCAGAAACACATTGTGG
AATACTGCCTTCCCACAGCAAGCAGGATACTCTTTGTAACACCTCCATCT
TGTGGAATCAAGGCAAACGTTTGTAGTTGGTGTGAATTTTTGATGCAGGT
TTTGCCTTTCTTTCTATTCTCTACCAGTTTGTTCATTTTCATCAACGATC
CCAGTCTGGAGCTCATGAATGAATTTCTCACTN

NNCCCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGAAGCTTAACTTGTCTGA
TATGATTCTATAGTGAAACAAAACTATATCTGGTTAAAGGGGATCAAACA
AAGAATAGAGAGGGGACACATGTTAAGTATCCAAGGAAGAGCCTTGGCAG
CCAAACTGAGGGCCCTTTCTTGTCTGTCATCAGCATAGAGAGGGGAGAAC
CAAGCTTGATTTTAAAGACATTGCACACTGCAGGTGTTACATTAATGATT
CCAGAGCCAGAGTGGTGGTAAACAGTAGAAAAGCCTTTCCCTGTAGGATG
TGGCACTGTGCCTTTTTAGTTGTATTATTGTGATAAGCAGTACCAGGTGC
TCTTGAGAGCTCTCGTTTCATTACTATATTGGAATGGTCCAGTGATTATA
CTTTGGCATTTAATACAGAATGTTCATGAATGCCAGCCTGAGGCTTTGGT
GTAAGTTTATATCGTGCTTGTGTGTTATCTGGAAGGTAAATTCCTCGGGC
TTGTATCCCCTTGTTCCAAAGCAGTCTATGTACAGTGCATATCAATGCAG
AAACGGTTTTAGTTATTCAGATATAAGAACACATGATGTTTTGTGGTTAT
AAATTAAAACTCACTAAGTTTTCTAGATTGCTTTTTAATAGAGTCTTCCT
ATGAAATGTCATCTTAGCAAATAATGTATCATTGGTGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_f02.b1 MSMg01no521_f02.b1 CHROMAT_FILE:
MSMg01no521_f02.b1 PHD_FILE: MSMg01no521_f02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:37 2005
         (681 letters)



>mm_chr1_68228694_68229774
          Length = 1081

 Score = 1311 bits (678), Expect = 0.0
 Identities = 678/678 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctggtggcacagcacacattccttttgcactggaataataacagaataaataca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctggtggcacagcacacattccttttgcactggaataataacagaataaataca 263

                                                                       
Query: 64  gcctaacagcctaagaacaaagtgtttctatcctcacttgcttggtgctttggtgccata 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcctaacagcctaagaacaaagtgtttctatcctcacttgcttggtgctttggtgccata 323

                                                                       
Query: 124 tttaacataactctctcaatctttcctttgtgaatatgcttctccttaaagagatatggt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttaacataactctctcaatctttcctttgtgaatatgcttctccttaaagagatatggt 383

                                                                       
Query: 184 tgcttctgttttcaagatgttgtacaccttactttaaaccccatgtgtcagagaggggag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgcttctgttttcaagatgttgtacaccttactttaaaccccatgtgtcagagaggggag 443

                                                                       
Query: 244 aaaattcaggatatcgatagaaagacttagaagagatggaaagaagtgaccagatggaat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaaattcaggatatcgatagaaagacttagaagagatggaaagaagtgaccagatggaat 503

                                                                       
Query: 304 gaagaagagtcactgctttcatggtctgactagtgcaaggtggcagtgagagtcagcaga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gaagaagagtcactgctttcatggtctgactagtgcaaggtggcagtgagagtcagcaga 563

                                                                       
Query: 364 tgaaatggtctcctggaccacaaactctgcaactcaatattctggtcaggtcccactgtg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgaaatggtctcctggaccacaaactctgcaactcaatattctggtcaggtcccactgtg 623

                                                                       
Query: 424 tctttccatccctgagtctcagaaaaatggatatctgagttcaatccattgggatgaagt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tctttccatccctgagtctcagaaaaatggatatctgagttcaatccattgggatgaagt 683

                                                                       
Query: 484 ctcagaaacacattgtggaatactgccttcccacagcaagcaggatactctttgtaacac 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctcagaaacacattgtggaatactgccttcccacagcaagcaggatactctttgtaacac 743

                                                                       
Query: 544 ctccatcttgtggaatcaaggcaaacgtttgtagttggtgtgaatttttgatgcaggttt 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ctccatcttgtggaatcaaggcaaacgtttgtagttggtgtgaatttttgatgcaggttt 803

                                                                       
Query: 604 tgcctttctttctattctctaccagtttgttcattttcatcaacgatcccagtctggagc 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tgcctttctttctattctctaccagtttgttcattttcatcaacgatcccagtctggagc 863

                             
Query: 664 tcatgaatgaatttctca 681
           ||||||||||||||||||
Sbjct: 864 tcatgaatgaatttctca 881


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space:   718641
Effective search space used:   718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no521_f02.g1 MSMg01no521_f02.g1 CHROMAT_FILE:
MSMg01no521_f02.g1 PHD_FILE: MSMg01no521_f02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:37 2005
         (658 letters)



>mm_chr1_68394140_68395197
          Length = 1058

 Score = 1272 bits (658), Expect = 0.0
 Identities = 658/658 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   taagaagcttaacttgtctgatatgattctatagtgaaacaaaactatatctggttaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 taagaagcttaacttgtctgatatgattctatagtgaaacaaaactatatctggttaaag 799

                                                                       
Query: 61  gggatcaaacaaagaatagagaggggacacatgttaagtatccaaggaagagccttggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gggatcaaacaaagaatagagaggggacacatgttaagtatccaaggaagagccttggca 739

                                                                       
Query: 121 gccaaactgagggccctttcttgtctgtcatcagcatagagaggggagaaccaagcttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gccaaactgagggccctttcttgtctgtcatcagcatagagaggggagaaccaagcttga 679

                                                                       
Query: 181 ttttaaagacattgcacactgcaggtgttacattaatgattccagagccagagtggtggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ttttaaagacattgcacactgcaggtgttacattaatgattccagagccagagtggtggt 619

                                                                       
Query: 241 aaacagtagaaaagcctttccctgtaggatgtggcactgtgcctttttagttgtattatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aaacagtagaaaagcctttccctgtaggatgtggcactgtgcctttttagttgtattatt 559

                                                                       
Query: 301 gtgataagcagtaccaggtgctcttgagagctctcgtttcattactatattggaatggtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gtgataagcagtaccaggtgctcttgagagctctcgtttcattactatattggaatggtc 499

                                                                       
Query: 361 cagtgattatactttggcatttaatacagaatgttcatgaatgccagcctgaggctttgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 cagtgattatactttggcatttaatacagaatgttcatgaatgccagcctgaggctttgg 439

                                                                       
Query: 421 tgtaagtttatatcgtgcttgtgtgttatctggaaggtaaattcctcgggcttgtatccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tgtaagtttatatcgtgcttgtgtgttatctggaaggtaaattcctcgggcttgtatccc 379

                                                                       
Query: 481 cttgttccaaagcagtctatgtacagtgcatatcaatgcagaaacggttttagttattca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cttgttccaaagcagtctatgtacagtgcatatcaatgcagaaacggttttagttattca 319

                                                                       
Query: 541 gatataagaacacatgatgttttgtggttataaattaaaactcactaagttttctagatt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gatataagaacacatgatgttttgtggttataaattaaaactcactaagttttctagatt 259

                                                                     
Query: 601 gctttttaatagagtcttcctatgaaatgtcatcttagcaaataatgtatcattggtg 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gctttttaatagagtcttcctatgaaatgtcatcttagcaaataatgtatcattggtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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