Query= MSMg01no521_h13.b1 MSMg01no521_h13.b1 CHROMAT_FILE:
MSMg01no521_h13.b1 PHD_FILE: MSMg01no521_h13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:49 2005
(687 letters)
>mm_chr1_138901762_138902850
Length = 1089
Score = 1222 bits (632), Expect = 0.0
Identities = 672/686 (97%), Gaps = 4/686 (0%)
Strand = Plus / Plus
Query: 5 gaattcagggttttgt-cgaaactgggcatgtgctctaccacaaacccatggtctaggtt 63
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagggttttgtgc-aaactgggcatgtgctctaccacaaacccatggtctaggtt 263
Query: 64 catatgtgtgtcttttcctctttcagcgacttgggaactactagaggccagatgctaagt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 catatgtgtgtcttttcctctttcagcgacttgggaactactagaggccagatgctaagt 323
Query: 124 gttctatctcagtgtctaacacagctgagctctgcctaattcatggtttaatacaagtgt 183
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gttctacctcagtgtctaacacagctgagctctgcctaattcatggtttaatacaagtgt 383
Query: 184 attttactgaattcctgtcttctagtctctacttcctgagtgatgaggttataggtgtat 243
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 384 attttactgaattcctgtcttctagtctctacttcctgagtgataaggttataggtgtat 443
Query: 244 actgctatttttacatgatgcagatgatcaaagccccagctatgtttatggaaggccaat 303
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 attgctatttttacatgatgcagatgatcaaagccccagctatgtttatggaaggccaat 503
Query: 304 actcttcccagatcagctacagacccattctccaaataagagttattt--tttttttctc 361
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 504 actcttcccagatcagctacagacccattctccaaataagagttatttattttttttctc 563
Query: 362 cctggttgatattgtagtttctaagaagaatgttggtacctgagtttgtagctcagtggt 421
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cctgattggtattgtagtttctaagaagaatgttggtacctgagtttgtagctcagtggt 623
Query: 422 agagcacttgcctagaatgtctaaggccccagggttcaatacctaccctggagggtgggg 481
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 624 agagcacttgcctagaatgtctaaggccccggggttcaatacctaccctggagggtgggg 683
Query: 482 cagccaactcaatctgagctgggtgtggtgcctcacacctgaaactgaagctcttgggaa 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cagccaactcaatctgagctgggtgtggtgcctcacacctgaaactgaagctcttgggaa 743
Query: 542 acagaggcaggcttgtgagttccagacctgcctgagttgaatgagactccttcttgaaat 601
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 744 acagaggcaggcttgtgagtttcagacctgcctgagttgaatgagactccttcttgaaag 803
Query: 602 gaaacaaaacaaaagcaaaacccacaaggcagacaggaaataatatcaaaacaaagccaa 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 804 gaaacaaaacaaaagcaaaacccacaaggcagacaggaaataatatcaaaacaaaaacaa 863
Query: 662 aaataattgtgtaataaagtctctct 687
||||||||||||||||||||||||||
Sbjct: 864 aaataattgtgtaataaagtctctct 889
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1089
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1079
Effective search space: 730483
Effective search space used: 730483
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no521_h13.g1 MSMg01no521_h13.g1 CHROMAT_FILE:
MSMg01no521_h13.g1 PHD_FILE: MSMg01no521_h13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:49 2005
(649 letters)
>mm_chr1_139075924_139076972
Length = 1049
Score = 1170 bits (605), Expect = 0.0
Identities = 638/649 (98%), Gaps = 2/649 (0%)
Strand = Plus / Minus
Query: 1 ttcccagccatgggttgacagagagaatacagaacctgtcttagcctgcccaagaggaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 ttcccagccatgggttgacagagagaatacagaacctgtcttagcctgcccaagaggaaa 598
Query: 61 tggcaggaaggatttccagaggacatgacacggggtctgagtctttaaaatgaagaggaa 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 597 tggcaggaaggatttccagaggacatgacacgggatctgagtctttaaaatgaagaggaa 538
Query: 121 ttaccagaagtgtatgtgtacatgtgtgagagagcagtcagaagcatacatgtagcatgt 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ttaccagaagtgtatgtgtacgtgtgtgagagagcagtcagaagcatacatgtagcatgt 478
Query: 181 gcatgtgtgtgctaggatgggggcagagtgggctttccagtaagcaaaatatacactgag 240
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 477 gcatgtatgtgctaggatgggggcagagtgggctttccagtaagcaaaatgtacactgag 418
Query: 241 gcatgaaacggcatggaggtcttgtttgccgaagtcaaactgtagaaagagactacatgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gcatgaaacggcatggaggtcttgtttgccgaagtcaaactgtagaaagagactacatgt 358
Query: 301 ccaacgatgaagagctctgtgtagaatactgaaaatgtaatcttgttataaatagggagg 360
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ccaactatgaagagctctgcgtagaatactgaaaatgtaatcttgttataaatagggagg 298
Query: 361 aaaaacatagatagaggcttctaaacatctggccccacctagagcctcggagacagcagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 aaaaacatagatagaggcttctaaacatctggccccacctagagcctcggagacagcagc 238
Query: 421 atctgaagctcaaggaaaaacaaaacaaaacaccatattttttttctactaacgtttttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 237 atctgaagctcaaggaaaaacaaaacaaaacaccatattttttttctactaacgtttatt 178
Query: 481 ctctcggtgatcttatctaatcttgtggctttaaacactgccaccttgagccactctttc 540
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 177 ctctcagtgatcttatctaatcttgtggccttaaacactgccaccttgagccactctttc 118
Query: 541 tctccagccttattccatc-tcctgaactcccataccctccccttagggtcccaggttag 599
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 tctccagccttattcca-catcctgaactcccataccctccccttagggtcccaggttag 59
Query: 600 gttctaatggagaccacgaacaaggctcagtgcagacattcccctagag 648
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 gttctaatggagaccacgaacaaggctcagtgcagacattcccctagag 10
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space: 663921
Effective search space used: 663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
