Query= MSMg01no521_j12.b1 MSMg01no521_j12.b1 CHROMAT_FILE:
MSMg01no521_j12.b1 PHD_FILE: MSMg01no521_j12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:58 2005
(577 letters)
>mm_chr1_135297626_135298602
Length = 977
Score = 1085 bits (561), Expect = 0.0
Identities = 573/577 (99%)
Strand = Plus / Plus
Query: 1 agggactggtcaaccttatcacaagttcaccaggaacaggcctgggtattagccaaagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggactggtcaaccttatcacaagttcaccaggaacaggcctgggtattagccaaagga 260
Query: 61 aggagaaacaaaatgtgagcagtcaagctggagagatggctaagaggctaagagcactga 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 aggagaaacaaaatgtgagcagtcaagctggagagatggctcagaggctaagagcactga 320
Query: 121 ctattcttcccaacgtcctgagttcaattcccagcaaccacatggtcactcacaaccatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctattcttcccaacgtcctgagttcaattcccagcaaccacatggtcactcacaaccatc 380
Query: 181 tgtaatgggttctgatgccctctctggtgtgtctgaagacagcaacagtatattcatata 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtaatgggttctaatgccctctctggtgtgtctgaagacagcaacagtatattcatata 440
Query: 241 aatataaaatctttttttaaaaatgtgagcagtcacagtatacctttacttggccacaag 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatataaaatcttttttttaaaatgtgagcagtcacagtatacctttacttggccacaag 500
Query: 301 cactacaggatgttgcaatctctttcttaaaagaacactacagaagccagagtctgggac 360
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cactacaggatgctgcaatctctttcttaaaagaacactacagaagccagagtctgggac 560
Query: 361 atcctatctggcaaaggagggatgtctgaagtcactcattaacaccaagcctacatctta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcctatctggcaaaggagggatgtctgaagtcactcattaacaccaagcctacatctta 620
Query: 421 catcctctggttggtgcccactcattctcccactacccctatgttttaacccaataaaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catcctctggttggtgcccactcattctcccactacccctatgttttaacccaataaaga 680
Query: 481 caaactgaccactatgttccaggttcacaaggtcggtcttgataagttctgggtaaggaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caaactgaccactatgttccaggttcacaaggtcggtcttgataagttctgggtaaggaa 740
Query: 541 aaggtgatcaaaagaaaccaaggctggggctggaaag 577
|||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaggtgatcaaaagaaaccaaggctggggctggaaag 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no521_j12.g1 MSMg01no521_j12.g1 CHROMAT_FILE:
MSMg01no521_j12.g1 PHD_FILE: MSMg01no521_j12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:58 2005
(620 letters)
>mm_chr1_135483963_135484979
Length = 1017
Score = 789 bits (408), Expect = 0.0
Identities = 423/430 (98%), Gaps = 5/430 (1%)
Strand = Plus / Minus
Query: 1 aaggccagaaagagctacatgagaccctacctagctcaaaacactaatgaaataccacag 60
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 426 aaggccagaaagagctacatgagac----cctagctcaaaacactaatgaaataccacag 371
Query: 61 agcttgacagtggcagtagatcacctgcctggcatctgcaaggctgggcttgacacaccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 agcttgacagtggcagtagatcacctgcctggcatctgcaaggctgggcttgacacaccc 311
Query: 121 gggggagggtggcacttgtaatgtgcagtcttgtttatttatgtatttctatgatataga 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aggggagggtggcacttgtaatgtgcagtcttgtttatttatgtatttctatgatataga 251
Query: 181 gtcttagaattgctatattggactgtaaggg-ttttttttcactacctcctccttcttct 239
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 250 gtcttagaattgctatattggactgtaagggtttttttttcactacctcctccttcttct 191
Query: 240 gaacatatcccttcctactttatgagcttcctattgttgttctataacccactgcattta 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 gaacatatcccttcctactttatgagcttcctattgttgttctataacccactgcattta 131
Query: 300 attatagttaactgcatggatatagagttatttactgggtcatgaacaacttaccaatgg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 attatagttaactgcatggatatagagttatttactgggtcatgaacaacttaccaatgg 71
Query: 360 atgtacccctgggggaaaaatgacttcctgtaaccattaactccccgtaatggggtgggg 419
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 70 atgtacccctgggggaaaaatgacttcctgtaaccactaactccccgtaatggggtgggg 11
Query: 420 tctatccatc 429
||||||||||
Sbjct: 10 tctatccatc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1017
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1007
Effective search space: 614270
Effective search space used: 614270
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
