BAC Information

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BAC

Clone NameMSMg01-521L08
Chromosome1 (Build37)
Map Location 175,588,605 - 175,589,101
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904
Downstream geneE430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521L08.T7 (MSMg01no521_l08.b1)MSMg01-521L08.TJ (MSMg01no521_l08.g1)
ACCAG592441AG592442
length746741
length of high quality
(start - end)
441 (49 - 489)497 (79 - 575)
definitionCHROMAT_FILE: MSMg01no521_l08.b1 PHD_FILE: MSMg01no521_l08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:07 2005CHROMAT_FILE: MSMg01no521_l08.g1 PHD_FILE: MSMg01no521_l08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:07 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CCTATCATTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAA
TGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTAAG
ATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGACA
GCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGG
TGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCT
CAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGG
GCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACT
ATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAG
ATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAA
TGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCC
AAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACA
AAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAA
CCTATGATACCCAAGATATAAGATACAATTTCCTAAACACATGAAACTCA
AGAAAAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAAAAG
NNGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGGGTAACTATTGCCACCAA
GAACTGAATATATTTCCTGCAGAGAAGAACATATGCAGTACAGGTACTTT
CAGTTTAATTACTTCCTAAACCATTCTCCTACTTATTAATAATTCTCCAA
GCCTGAAAATAACCTGAGAAGGATATTACACACATGCACATCTACTCATG
AATAAATGGGAAGGAGTTTGGAATTAGATGCCTGCTGGATGAGAGCTAAA
CTGCTTTCCTTTAGCAGTTTAGTGATTTAGCAGTTGGTGAATAAGTTATT
GCTTCCTTAGCATTTCTGAACTATTTATGGATATTTATGAATGGATAAGC
CCAGTTGGTACAGTATGCCTATGCAATGATAACCTGGAAGCCTTGACAGC
TGTGGCAGAGCTCTTAGGTCTTAGTCACATCAGGGACCTGAAGTGACCTT
TGTCCAACATAGTTTTTCTCTGAAGGAGAAGGAAGACTATCTGGTGTTTC
ATGTAATTTGAGATACAAAACAAATGACACCCGATGGTGGGTCTACAAGA
AGGATCATATTCTTGTGGTGTTACTGTTAGGCTGCTTAAGGTCAATGCTT
TACGTGCATGGCCACATGGGCATACCAGAAATTTTTTTCTAAAAGCTGGT
CTTTGGGAGCTCTTGTAACCTCTGCTTTTGACAAAGAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_l08.g1 MSMg01no521_l08.g1 CHROMAT_FILE:
MSMg01no521_l08.g1 PHD_FILE: MSMg01no521_l08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:07 2005
         (497 letters)



>mm_chr1_175588405_175589301
          Length = 897

 Score =  961 bits (497), Expect = 0.0
 Identities = 497/497 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgggtaactattgccaccaagaactgaatatatttcctgcagagaagaacatatgcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgggtaactattgccaccaagaactgaatatatttcctgcagagaagaacatatgcag 260

                                                                       
Query: 61  tacaggtactttcagtttaattacttcctaaaccattctcctacttattaataattctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacaggtactttcagtttaattacttcctaaaccattctcctacttattaataattctcc 320

                                                                       
Query: 121 aagcctgaaaataacctgagaaggatattacacacatgcacatctactcatgaataaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagcctgaaaataacctgagaaggatattacacacatgcacatctactcatgaataaatg 380

                                                                       
Query: 181 ggaaggagtttggaattagatgcctgctggatgagagctaaactgctttcctttagcagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaaggagtttggaattagatgcctgctggatgagagctaaactgctttcctttagcagt 440

                                                                       
Query: 241 ttagtgatttagcagttggtgaataagttattgcttccttagcatttctgaactatttat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttagtgatttagcagttggtgaataagttattgcttccttagcatttctgaactatttat 500

                                                                       
Query: 301 ggatatttatgaatggataagcccagttggtacagtatgcctatgcaatgataacctgga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggatatttatgaatggataagcccagttggtacagtatgcctatgcaatgataacctgga 560

                                                                       
Query: 361 agccttgacagctgtggcagagctcttaggtcttagtcacatcagggacctgaagtgacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agccttgacagctgtggcagagctcttaggtcttagtcacatcagggacctgaagtgacc 620

                                                                       
Query: 421 tttgtccaacatagtttttctctgaaggagaaggaagactatctggtgtttcatgtaatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttgtccaacatagtttttctctgaaggagaaggaagactatctggtgtttcatgtaatt 680

                            
Query: 481 tgagatacaaaacaaat 497
           |||||||||||||||||
Sbjct: 681 tgagatacaaaacaaat 697


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)