Query= MSMg01no521_l15.b1 MSMg01no521_l15.b1 CHROMAT_FILE:
MSMg01no521_l15.b1 PHD_FILE: MSMg01no521_l15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:09 2005
(669 letters)
>mm_chr1_81533318_81534389
Length = 1072
Score = 1276 bits (660), Expect = 0.0
Identities = 665/668 (99%), Gaps = 3/668 (0%)
Strand = Plus / Plus
Query: 5 gaattcaccagtactctagtgtgattccctctgtagaaagacttctgtgtcttttaaaat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccagtactctagtgtgattccctctgtagaaagacttctgtgtcttttaaaat 264
Query: 65 tttgtggtttatcacaaattgccaaaaatctagcccgcagagctattcatcagctcaaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttgtggtttatcacaaattgccaaaaatctagcccgcagagctattcatcagctcaaaa 324
Query: 125 tgatttcaagtcgcccccc---gtccccccgcccacccgaacacccctcgttaaagcttt 181
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgatttcaagtcgcccccccccgtccccccgcccacccgaacacccctcgttaaagcttt 384
Query: 182 gaatgttctgttggactccttatgttaatactgtatgtgttaccgggatttctgctcata 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaatgttctgttggactccttatgttaatactgtatgtgttaccgggatttctgctcata 444
Query: 242 ggaaacaaagcacattcataaaatctagatttcacacaaagatcgctttttcttcaatat 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggaaacaaagcacattcataaaatctagatttcacacaaagatcgctttttcttcaatat 504
Query: 302 tgcatttaaatcgacgcattcttttccctctatattcccgaaaatcagatagggagactg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgcatttaaatcgacgcattcttttccctctatattcccgaaaatcagatagggagactg 564
Query: 362 gatggatccgttactgaagggaatttaactgagccttagtaaaaattaatttagatgtgt 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gatggatccgttactgaagggaatttaactgagccttagtaaaaattaatttagatgtgt 624
Query: 422 gtggtttttgtaaaacatgcaatctgttgtgtttgatcttgtccttggaagcaggagcag 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtggtttttgtaaaacatgcaatctgttgtgtttgatcttgtccttggaagcaggagcag 684
Query: 482 aagtagttcgtgcacaaacacactaaatgaatatgtgtttatgcaagcaaataaatgacc 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aagtagttcgtgcacaaacacactaaatgaatatgtgtttatgcaagcaaataaatgacc 744
Query: 542 cttttctattccgtagtctactgaaccctcctctggctccacgttagtccatggatactg 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cttttctattccgtagtctactgaaccctcctctggctccacgttagtccatggatactg 804
Query: 602 ggtggagttcaccttcactaccaggcacaagcctgttatatgtaactctaaaacagttat 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ggtggagttcaccttcactaccaggcacaagcctgttatatgtaactctaaaacagttat 864
Query: 662 ttactgta 669
||||||||
Sbjct: 865 ttactgta 872
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1072
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1062
Effective search space: 699858
Effective search space used: 699858
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no521_l15.g1 MSMg01no521_l15.g1 CHROMAT_FILE:
MSMg01no521_l15.g1 PHD_FILE: MSMg01no521_l15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:09 2005
(522 letters)
>mm_chr1_81660592_81661514
Length = 923
Score = 770 bits (398), Expect = 0.0
Identities = 419/426 (98%), Gaps = 2/426 (0%)
Strand = Plus / Minus
Query: 1 cattagataggctcattgatatagagtttccctcttataagattctgttcaaattaattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 cattagataggctcattgatatagagtttccctcttataagattctgttcaaattaattg 367
Query: 61 atcattgtttttgtttgatggattggttaattttctcattactgaatttc-aaaaaaaat 119
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 366 atcattgtttttgtttgatggattggttaattttctcattactgaatttcaaaaaaaaat 307
Query: 120 ctatgtaattctggaaacaaaagccttttgttgagttttggaaaaacaaaaaacaaaaaa 179
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 306 ctatgtaattctggaaacaaaagccttttgttaagttttggaaaaacaaaaaacaaaaaa 247
Query: 180 gccttttatagactgtgactttcattaatagtctgtg-tttttttttcttttgtattaat 238
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 246 gccttttatagactgtgacttgcattaatagtctgtgttttttttttcttttgtattaat 187
Query: 239 cattttatttgtttacatttcaaatgatatcccccttcctggttttccctccacaacccc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 cattttatttgtttacatttcaaatgatatcccccttcctggttttccctccacaacccc 127
Query: 299 ctttcctctttgtctccaggagggtactcctctgcccactcacctactctcacctcactg 358
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 126 ctttcctctttgtctccaggaggatactcctctgcccactcacctactctcacctcactg 67
Query: 359 ccctagcattcccctgcactggggcatcaagcctccacaggaccaaggggctccccctcc 418
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 66 ccctagcattcccctgcactggagcatcaagcctccacaggaccaaggggctcccccccc 7
Query: 419 attgat 424
||||||
Sbjct: 6 attgat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 923
Length adjustment: 10
Effective length of query: 512
Effective length of database: 913
Effective search space: 467456
Effective search space used: 467456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
