BAC Information

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BAC

Clone NameMSMg01-522A05
Chromosome1 (Build37)
Map Location 68,279,945 - 68,442,215
singlet/doubletdoublet
Overlap geneErbb4
Upstream geneKif22-ps
Downstream geneLOC667842, EG241084
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-522A05.T7 (MSMg01no522_a05.b1)MSMg01-522A05.TJ (MSMg01no522_a05.g1)
ACCAG592672AG592673
length770761
length of high quality
(start - end)		626 (52 - 677)628 (78 - 705)
definitionCHROMAT_FILE: MSMg01no522_a05.b1 PHD_FILE: MSMg01no522_a05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:30 2005CHROMAT_FILE: MSMg01no522_a05.g1 PHD_FILE: MSMg01no522_a05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,279,945 - 68,280,566)(68,441,588 - 68,442,215)
sequence
NNNNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTATTTTGTTAATTTTGTGCCTCATCTGCCTGTAGTCTCT
ACTTGTAGAAACACAGGGTTATTGTAGTGACCATGTGATATTGTATTTTG
CTACGGTTAACAATAACTAAATTCAAAATAAATAATATTTAAAAGAACCT
ATCAAATTAACCAACCAACCAACCAATCAACCAACCAACCAACCAACTAG
CTAACCATCCAACCAACTAATCAACCAATGAAACAAACAAAACAAAACAC
TAATAATTTTTCAGTGTGACATTGAAAAGTATGGGTTTATATTCATAAAT
ATAAATGACTGAATTAATACTTTATGGCTACCCACATATTGAAATGAAAC
TGATAGTCAAAAAAGTAAAAGTAAGCGAAGGAGAGAATGGAAAAGTAGCC
AAGATGAGGCTATGCAGTTGGTCATGAATACATCAGTTGGCTTTTGAGTT
GGACCAGAAATGCTTTCAATAGCCCCTCTGTGGTCCCTCTAAAGTTCAAC
CATTTCTTTACCATTCTTGATCTGTCCAAGGAACATCATGTTGAAACTGC
TGGGCTACAAGGACCCACTTGTTTAAAACTAGGGCAGTGCCTTTTTATTT
GGTATAGGAATGGACATAACTGTAAGGGAGGCCAGAAAGTCTTTGCTTTA
ATCCGTCTCTTCCAGCTACAGTTAGTGGGGTGCTTCACACAGTCTGGACA
GACGATGCTGAAATGACAAN

NGGCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTATCTTAAGGTTTTTATGC
TATTTTTATGTGAGAAGATTTATCAGATTAATAGTGTTTAATATGATGAA
ATGTTAAACAAATTGTTAAACAAATAGTTTCTGAACTATCACTGAAGCCT
CTGCCAATGATTCTGCCTGGGATCTCTCATTTTTATAAAGCAGCCTTTGT
TGTCACACATTTATTAGTACTGACATTTGTATGAGAACTGAATCTTTATC
AAGTATTAACCTGGGTTTTAAATTTCTCATCTGTTATTATATATTTCCCA
CCTGAAATCATAACTGTCTCCACATAGTTCCATAATTATTTGCAATAGTG
CTGATTGTGTTATGACGCTTTTATGGGAAATCAAACTCCAAGGGACAATT
ATTAAATTTCATGATGGCCATAATAACATAATGGGGAAATATGAATGTAT
TTGATCAAAACTGACAGCTGAGTTTTTAATAAAAGGCTAGAGCCTTTTTT
TGTGAAAGTAGGATAACATAATTTTCTTGTCATCTTTAAAAAGAAATTTG
TATGAAATTCTTTCTTTGTAGTTTTCAAGTTACCTACCAGGTAAACTTTC
ATGTGCAGTTTTTTTTTTTTTTCATTTTAAATCTGCTTGTGCTAACAATG
GAAAAGATGTGGTTTAGAAATTACTATTGTTTTCAGGTGGCCTGTAATAT
GAGCATGTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no522_a05.b1 MSMg01no522_a05.b1 CHROMAT_FILE:
MSMg01no522_a05.b1 PHD_FILE: MSMg01no522_a05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:30 2005
         (626 letters)



>mm_chr1_68279741_68280766
          Length = 1026

 Score = 1203 bits (622), Expect = 0.0
 Identities = 622/622 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctattttgttaattttgtgcctcatctgcctgtagtctctacttgtagaaacaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctattttgttaattttgtgcctcatctgcctgtagtctctacttgtagaaacaca 264

                                                                       
Query: 65  gggttattgtagtgaccatgtgatattgtattttgctacggttaacaataactaaattca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gggttattgtagtgaccatgtgatattgtattttgctacggttaacaataactaaattca 324

                                                                       
Query: 125 aaataaataatatttaaaagaacctatcaaattaaccaaccaaccaaccaatcaaccaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaataaataatatttaaaagaacctatcaaattaaccaaccaaccaaccaatcaaccaac 384

                                                                       
Query: 185 caaccaaccaactagctaaccatccaaccaactaatcaaccaatgaaacaaacaaaacaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caaccaaccaactagctaaccatccaaccaactaatcaaccaatgaaacaaacaaaacaa 444

                                                                       
Query: 245 aacactaataatttttcagtgtgacattgaaaagtatgggtttatattcataaatataaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aacactaataatttttcagtgtgacattgaaaagtatgggtttatattcataaatataaa 504

                                                                       
Query: 305 tgactgaattaatactttatggctacccacatattgaaatgaaactgatagtcaaaaaag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgactgaattaatactttatggctacccacatattgaaatgaaactgatagtcaaaaaag 564

                                                                       
Query: 365 taaaagtaagcgaaggagagaatggaaaagtagccaagatgaggctatgcagttggtcat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taaaagtaagcgaaggagagaatggaaaagtagccaagatgaggctatgcagttggtcat 624

                                                                       
Query: 425 gaatacatcagttggcttttgagttggaccagaaatgctttcaatagcccctctgtggtc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaatacatcagttggcttttgagttggaccagaaatgctttcaatagcccctctgtggtc 684

                                                                       
Query: 485 cctctaaagttcaaccatttctttaccattcttgatctgtccaaggaacatcatgttgaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cctctaaagttcaaccatttctttaccattcttgatctgtccaaggaacatcatgttgaa 744

                                                                       
Query: 545 actgctgggctacaaggacccacttgtttaaaactagggcagtgcctttttatttggtat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 actgctgggctacaaggacccacttgtttaaaactagggcagtgcctttttatttggtat 804

                                 
Query: 605 aggaatggacataactgtaagg 626
           ||||||||||||||||||||||
Sbjct: 805 aggaatggacataactgtaagg 826


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no522_a05.g1 MSMg01no522_a05.g1 CHROMAT_FILE:
MSMg01no522_a05.g1 PHD_FILE: MSMg01no522_a05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:30 2005
         (628 letters)



>mm_chr1_68441388_68442415
          Length = 1028

 Score = 1214 bits (628), Expect = 0.0
 Identities = 628/628 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctatcttaaggtttttatgctatttttatgtgagaagatttatcagattaatagtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 tttctatcttaaggtttttatgctatttttatgtgagaagatttatcagattaatagtgt 769

                                                                       
Query: 61  ttaatatgatgaaatgttaaacaaattgttaaacaaatagtttctgaactatcactgaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 ttaatatgatgaaatgttaaacaaattgttaaacaaatagtttctgaactatcactgaag 709

                                                                       
Query: 121 cctctgccaatgattctgcctgggatctctcatttttataaagcagcctttgttgtcaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 cctctgccaatgattctgcctgggatctctcatttttataaagcagcctttgttgtcaca 649

                                                                       
Query: 181 catttattagtactgacatttgtatgagaactgaatctttatcaagtattaacctgggtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 catttattagtactgacatttgtatgagaactgaatctttatcaagtattaacctgggtt 589

                                                                       
Query: 241 ttaaatttctcatctgttattatatatttcccacctgaaatcataactgtctccacatag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ttaaatttctcatctgttattatatatttcccacctgaaatcataactgtctccacatag 529

                                                                       
Query: 301 ttccataattatttgcaatagtgctgattgtgttatgacgcttttatgggaaatcaaact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ttccataattatttgcaatagtgctgattgtgttatgacgcttttatgggaaatcaaact 469

                                                                       
Query: 361 ccaagggacaattattaaatttcatgatggccataataacataatggggaaatatgaatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ccaagggacaattattaaatttcatgatggccataataacataatggggaaatatgaatg 409

                                                                       
Query: 421 tatttgatcaaaactgacagctgagtttttaataaaaggctagagcctttttttgtgaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tatttgatcaaaactgacagctgagtttttaataaaaggctagagcctttttttgtgaaa 349

                                                                       
Query: 481 gtaggataacataattttcttgtcatctttaaaaagaaatttgtatgaaattctttcttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gtaggataacataattttcttgtcatctttaaaaagaaatttgtatgaaattctttcttt 289

                                                                       
Query: 541 gtagttttcaagttacctaccaggtaaactttcatgtgcagttttttttttttttcattt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gtagttttcaagttacctaccaggtaaactttcatgtgcagttttttttttttttcattt 229

                                       
Query: 601 taaatctgcttgtgctaacaatggaaaa 628
           ||||||||||||||||||||||||||||
Sbjct: 228 taaatctgcttgtgctaacaatggaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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