NNNTTGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGAACTCTTCAGCTGGGGAATGGTGGTAATGAAGTGTTC
CCGTAAAACAGACTGTTGAGAAGGATCCAGTGTGGATTCAGAACTCTTCA
GCTGGGGAATGGTGGTAATAAAGTGTTCCCGTAAAACAGACTGTTGAGAA
GGATTCAACTGCGTGAATTCAGAACTCTTCAGCTGGGGAATGGTGGTAAT
GAAGTGTTCCCGTAAAACAGACTGTTGAGAAGGATCCAGTGTGGATTCAG
AACTCTTCAGCTGGGGAATGGTGGTAATAAAGTGTTCCCGTAAAACAGAC
TGTTGAGAAGGATTCAACTGCGTGAATTCAGAACTCTTCAGCTGGGGAAC
AGGTTACTCGTAAGTATAGCTTTACAAGGTAAGTCTGGCCTTGAACTTTC
TAACGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGGAAATAGCTTTAC
AAGGTATGTTTGGCCTTGAACTTTCTCTAGTGTTAGGAGCCTTTTTGTTC
CTTTTCACATGTTATCAAGTGGTTAAGGCAGGGCTGAAAATTCTGGATGA
AATTCAGGGCAATCTATCAGAAGTAAAGCGGGGAGAGAGAGTAGGAGCAA
AGAGGAAATATGGTACACAAAATAAGTATACAGGCCTTTCCACGGGTCTT
GAACCTGAGGAAAAGTTTAGGTCAGGTAAGAATACCTGGGGAGAGATTAG
AANGAAG

TTTTTCTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCTCGTGCTGTCTTTGAT
TTTCAATAAACTGGTTGTAATGTAGTTCCTAGATGCTTTGAAAAGTTATA
AATTAAATTATGGTTAGATGTATACTTCTGCTTTTTTTTTCCAGAAAAAA
AAATGTTTTTTGGAAGCCCATGATCTGTTTATATGTGATAATTTTGAAGT
TAACCAAAAAAAAAAAAACAAAAAAAAACAACAAAAAAAAAACAATAACA
ATAACAAATCTATTGAAAATCAAATAGGCTATCACAACACTACTTTGCAT
AGAAAAGTAATGCTATAGTCTCCATGAGTACTGAGTTATTCTGATTATTT
CTCTTTCAACATGACATATTTAATCACTGCTATACTTAGGGATAATCAAA
TCATATATTTCTTATAATATGTCAATCAGAACTCACCTTTTACATGGATG
GAAGGATGGACCATCCAGAGACTGCCCCACTCAGGGATCCATCCCATAAT
CAGCCACCAAACACAGACATTATTGCATATGCCAGCAAGATTTTGCTGAC
AGGACCCTAATATAGCTCTCTCTTGTGAGGCTATGCCAGTGCCTGGCAAA
TACAGAAGTGGATGCTCACAATCATCTATTGAATGGAACACAGGGCCCCC
AATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTGAAGGGGTCTGCAATCC
TATAA

Query= MSMg01no522_b02.g1 MSMg01no522_b02.g1 CHROMAT_FILE:
MSMg01no522_b02.g1 PHD_FILE: MSMg01no522_b02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:34 2005
         (650 letters)



>mm_chr1_27657978_27659027
          Length = 1050

 Score = 1189 bits (615), Expect = 0.0
 Identities = 640/653 (98%), Gaps = 10/653 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctcgtgctgtctttgattttcaataaactggttgtaatgtagttcctagatgctttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 attctcgtgctgtctttgattttcaataaactggttgtaatgtagttcctagatgctttg 781

                                                                       
Query: 61  aaaagttataaattaaattatggttagatgtatacttctgctttt--tttttccagaaaa 118
           ||||||||||||||||||||||||||||||| |||||||| ||||  |||||||||||||
Sbjct: 780 aaaagttataaattaaattatggttagatgtgtacttctggtttttatttttccagaaaa 721

                                                                       
Query: 119 aaaaatgttttttggaagcccatgatctgtttatatgtgataattttgaagttaacc-aa 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 720 aaaaatgttttttggaagcccatgatctgtttatatgtgataattttgaagttaaccaaa 661

                                                                       
Query: 178 aaaaaaaaaaacaaaaaaaaacaacaaaaaaaaaacaataacaataacaaatctattgaa 237
           |||||||||||||||| |||||       |||||||||||||||||||||||||||||||
Sbjct: 660 aaaaaaaaaaacaaaacaaaac-------aaaaaacaataacaataacaaatctattgaa 608

                                                                       
Query: 238 aatcaaataggctatcacaacactactttgcatagaaaagtaatgctatagtctccatga 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 aatcaaataggctatcacaacactactttgcatagaaaagtaatgctatagtctccatga 548

                                                                       
Query: 298 gtactgagttattctgattatttctctttcaacatgacatatttaatcactgctatactt 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gtactgagttattctgattatttctctttcaacatgacatatttaatcactgctatactt 488

                                                                       
Query: 358 agggataatcaaatcatatatttcttataatatgtcaatcagaactcaccttttacatgg 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 agggataatcaaatcatatatttcttataatatgtcaatcagaactcaccttttacatgg 428

                                                                       
Query: 418 atggaaggatggaccatccagagactgccccactcagggatccatcccataatcagccac 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 atggaaggatggaccatccagagactgccccactcagggatccatcccataatcagccac 368

                                                                       
Query: 478 caaacacagacattattgcatatgccagcaagattttgctgacaggaccctaatatagct 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 caaacacagacattattgcatatgccagcaagattttgctgacaggaccctaatatagct 308

                                                                       
Query: 538 ctctcttgtgaggctatgccagtgcctggcaaatacagaagtggatgctcacaatcatct 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ctctcttgtgaggctatgccagtgcctggcaaatacagaagtggatgctcacaatcatct 248

                                                                
Query: 598 attgaatggaacacagggcccccaatggaggagctagagaaagtacccaagga 650
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 attgaatggaacacagggcccccaatggaggagctagagaaagtacccaagga 195


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)