Query= MSMg01no522_b08.b1 MSMg01no522_b08.b1 CHROMAT_FILE:
MSMg01no522_b08.b1 PHD_FILE: MSMg01no522_b08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:36 2005
(624 letters)
>mm_chr1_115978584_115979607
Length = 1024
Score = 1154 bits (597), Expect = 0.0
Identities = 615/621 (99%), Gaps = 1/621 (0%)
Strand = Plus / Plus
Query: 5 gaattcaatgattgatttctttaggaagctatttcctctgaattaaaatatttacctttg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatgattgatttctttaggaagctatttcctctgaattaaaatatttacctttg 264
Query: 65 gttgtcttaatgctcaggaaatttaaaatttaaacatcttattttacagaacttaacaca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttgtcttaatgctcaggaaatttaaaatttaaacatcttattttacagaacttaacaca 324
Query: 125 taggtggtaaacaagtcaaaagtatcaagaactccccaaaatgtagaagatgtaggagta 184
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 325 ttggtggtaaacaagtcaaaagtatcaagaactccccaaaatgtagaagatgtaggaata 384
Query: 185 ccctccaagttcaagtaaggactgctgaatgaaggagactctgacttgtcaagctgcctg 244
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 385 ccctccaagttcaagtaaggactgctgaacgaaggagactctgacttgtcaagctgcctg 444
Query: 245 cttatatgcatgaagctatgggactgattaattattactcaaaatgcaggttagggtgag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttatatgcatgaagctatgggactgattaattattactcaaaatgcaggttagggtgag 504
Query: 305 cttttcagcaattcaactgcttttgcggcatttccataagtaacccctatttatattcct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttttcagcaattcaactgcttttgcggcatttccataagtaacccctatttatattcct 564
Query: 365 ataataatataaatgcactcattagatcactaggttggacttgtatggaaaggttaattt 424
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 565 ataataatataaatgcactcattagatcactaggttgggcttgtatggaaaggttaattt 624
Query: 425 ggtctttcatgaatcctctatcatgggtaaatgcatgttaatttatctcttactgtaaaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggtctttcatgaatcctctatcatgggtaaatgcatgttaatttatctcttactgtaaaa 684
Query: 485 a-gtttcatttacattataataaaataccttgcaaaaccaactgaaggagaaaatgctat 543
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aagtttcatttacattataataaaataccttgcaaaaccaactgaaggagaaaatgctat 744
Query: 544 cgtcttagaatttccagtatacagtccaatattcttaaaagtcatctatatataatgtca 603
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cctcttagaatttccagtatacagtccaatattcttaaaagtcatctatatataatgtca 804
Query: 604 catctgcatgtgtgtatgaga 624
|||||||||||||||||||||
Sbjct: 805 catctgcatgtgtgtatgaga 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_b08.g1 MSMg01no522_b08.g1 CHROMAT_FILE:
MSMg01no522_b08.g1 PHD_FILE: MSMg01no522_b08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:36 2005
(593 letters)
>mm_chr1_116194766_116195758
Length = 993
Score = 1064 bits (550), Expect = 0.0
Identities = 584/598 (97%), Gaps = 8/598 (1%)
Strand = Plus / Minus
Query: 2 aggacagccagggctacatagaaaccctgtctcaaaaagccaaaaaaacaacaa----aa 57
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 993 aggacagccagggctacatagaaaccctgtctcaaaaagccaaaaaaacaacaacaacaa 934
Query: 58 aaaaaaaaac--aaaaaaaaaacaaaaaaacccaaacaaacaaaaaaaacaaaaaacaaa 115
|||||||||| |||||||||||||||||| ||||||||||||||||| || ||| |||
Sbjct: 933 aaaaaaaaacaaaaaaaaaaaacaaaaaaaaacaaacaaacaaaaaaaa-aacaaa-aaa 876
Query: 116 caaacaaacaaacaaacaaaaaacctgtgggaaatatctaaacagagaattcttaaaaga 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 caaacaaacaaacaaacaaaaaacctgtgggaaatatctaaacagagaattcttaaaaga 816
Query: 176 agaaacaaaaatggctgtgatacctttatagaaattttaagcattcttagttatcaggaa 235
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 agaaacacaaatggctgtgatacctttatagaaattttaagcattcttagttatcaggaa 756
Query: 236 aatataaattaatactactttaaattttaccttaaacttttattttccaattattattaa 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 aatataaattaatactactttaaattttaccttaaacttttattttccaattattattaa 696
Query: 296 taaatttgaagttgacagtcttcttcaaacatttcttagggagcacctgtcatttttttc 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 taaatttgaagttgacagtcttcttcaaacatttcttagggagcacctgtcatttttttc 636
Query: 356 ctgaactgcttttggaattttctctttctttgtgaatttcaccatgaatatatattctca 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 ctgaactgcttttggaattttctctttctttgtgaatttcaccatgaatatatattctca 576
Query: 416 cttgaggttcttcaatccatttagtatttcccttagttttataatgtactcaggcttttg 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cttgaggttcttcaatccatttagtatttcccttagttttataatgtactcaggcttttg 516
Query: 476 tattcttaattacttcttttttcttcctaaggtagcaaactgatctctctccttttttct 535
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 515 tattcttaattacttcttttttcttcctaaggtaccaaactgatctctctccttttttct 456
Query: 536 ttgctccctctcactttctccatgtccttcttcttttccctctctcttttttccatcg 593
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 455 ttgctccctctcactttctccatgtccttcttcttttccctctctctttcttccatcg 398
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space: 573089
Effective search space used: 573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
