BAC Information

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BAC

Clone NameMSMg01-522D06
Chromosome1 (Build37)
Map Location 89,777,980 - 89,957,353
singlet/doubletdoublet
Overlap geneUsp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10
Upstream gene4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag
Downstream geneUgt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-522D06.T7 (MSMg01no522_d06.b1)MSMg01-522D06.TJ (MSMg01no522_d06.g1)
ACCAG592818AG592819
length761746
length of high quality
(start - end)		501 (50 - 550)278 (79 - 356)
definitionCHROMAT_FILE: MSMg01no522_d06.b1 PHD_FILE: MSMg01no522_d06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:45 2005CHROMAT_FILE: MSMg01no522_d06.g1 PHD_FILE: MSMg01no522_d06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(89,777,980 - 89,778,476)(89,957,076 - 89,957,353)
sequence
TTCAGTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTCATGCTCTATTCCTTGGCTTTCTTTATGGTGGTATGGGT
TATTCTCATAGGGTCTGTCTCTTGTCCCTATAGTATTTGTTTTAGTTGGA
ACTTTTTTCCAATTATTTTGCTGGAGAAACCCAAACCAGAGGGATCCTCT
AACTCTGGATCCTGACTGGCTGTCTCATACCTAAACTGGAAGCACAAGAA
AGAAAGGTCAGCATTGGTATACATACCCACTAATGAACTCTGGAGTGAAA
GCCACAGACTACCTGTGATCCATGCTCTTTGGGAGAGGCAGGCAGACAGG
TGGTTGCATGAATTTCGCATGGTGTATTGATCAGATGTTGAGGTTTCAAG
GAACCTGAGCTTGTAGGTGTGGGTAGGGAGAATCTGGGCAGCACCACCAG
TGCTTGGATGTGCTTGCCCTGGCTTGCCTGAAATCCTCTGTTTGCATCTC
TCTCCAGTCGATTATATTTGATGAGGTAGACCTGACTGATGCCAGCGTAG
CAGAATCCAGCACCAAAAATGTCAACAACAGTTTTACGGTAAGATTCTAA
GCCACACCCTTATCCTTCTCCAAGGCTGCATTTCTTTCTCGTTGGAATGT
GGCATGAAGTACTTCAGAGTTTCTCATCCCCTTCATGATGAATTTCTGGT
AAATGTTGGATTTCATGCTGAAAGCAGTACTGTGGCTGGAGAATAATCAG
AACATGGTAAN

NTTCACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAAAATTATGAACTCCATTA
AGAGTCTTTATTTATTATAATATCCTTGCATGGCTGAACATCCTAACAGG
GGCTAGGAATGGCAGGAGGTGAAAAGTGACATTTAGTTTTCTGGAGGAAG
TAAAAAAATGCCAGATAAGGCCACACCAGAGGACACCTTGTGTAGGAAAG
GCTGGTGCAGAGCCAAACCAACTCTGTTGCTCTTGTGTGTATGGCAATTC
CATGGAGTCACCATTGCTGTGAGACGTAATTACGCCTCTATAAAGAATTC
TCTGGGGAAGATTCATGGGTGTTGTGTTATAAAACTATCATCAAATACCC
TAGGTAGGACCTAGCACACTGAAACAACAACACATGCCCTAGACACCTAG
TCACACATTTTTCCTTGGAAATAATGTATGTATAAATCCATCCATAACTT
TTTTACCCCCCATTACAAAACCCTATGGGGGGAAAAATGGGCTGGCCCTT
TCCAAAAAGGAAGGGGAAATAAATGGGCCCCCAAAAAAGGTTTTTGCGCC
GGGTGGGCCCCTGGGGTTAAAAAACCAAAAAGGGGGTGGGGGGGGGAGGC
TTTTTTTTTAAAAACACCCTTTCCCAAATTTACCCCAATATTTTTTGAAA
AAGGGGGGGGGGGGCCGGAAAACAATTATGTGTGGGGGGGAGGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no522_d06.b1 MSMg01no522_d06.b1 CHROMAT_FILE:
MSMg01no522_d06.b1 PHD_FILE: MSMg01no522_d06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:45 2005
         (501 letters)



>mm_chr1_89777776_89778676
          Length = 901

 Score =  946 bits (489), Expect = 0.0
 Identities = 495/497 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctcatgctctattccttggctttctttatggtggtatgggttattctcataggg 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 205 gaattcctcatgctctattccttggctttctttatggtggtatgggttattctcatgggg 264

                                                                       
Query: 65  tctgtctcttgtccctatagtatttgttttagttggaacttttttccaattattttgctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctgtctcttgtccctatagtatttgttttagttggaacttttttccaattattttgctg 324

                                                                       
Query: 125 gagaaacccaaaccagagggatcctctaactctggatcctgactggctgtctcataccta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagaaacccaaaccagagggatcctctaactctggatcctgactggctgtctcataccta 384

                                                                       
Query: 185 aactggaagcacaagaaagaaaggtcagcattggtatacatacccactaatgaactctgg 244
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atctggaagcacaagaaagaaaggtcagcattggtatacatacccactaatgaactctgg 444

                                                                       
Query: 245 agtgaaagccacagactacctgtgatccatgctctttgggagaggcaggcagacaggtgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agtgaaagccacagactacctgtgatccatgctctttgggagaggcaggcagacaggtgg 504

                                                                       
Query: 305 ttgcatgaatttcgcatggtgtattgatcagatgttgaggtttcaaggaacctgagcttg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttgcatgaatttcgcatggtgtattgatcagatgttgaggtttcaaggaacctgagcttg 564

                                                                       
Query: 365 taggtgtgggtagggagaatctgggcagcaccaccagtgcttggatgtgcttgccctggc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taggtgtgggtagggagaatctgggcagcaccaccagtgcttggatgtgcttgccctggc 624

                                                                       
Query: 425 ttgcctgaaatcctctgtttgcatctctctccagtcgattatatttgatgaggtagacct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttgcctgaaatcctctgtttgcatctctctccagtcgattatatttgatgaggtagacct 684

                            
Query: 485 gactgatgccagcgtag 501
           |||||||||||||||||
Sbjct: 685 gactgatgccagcgtag 701


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no522_d06.g1 MSMg01no522_d06.g1 CHROMAT_FILE:
MSMg01no522_d06.g1 PHD_FILE: MSMg01no522_d06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:45 2005
         (278 letters)



>mm_chr1_89956876_89957553
          Length = 678

 Score =  538 bits (278), Expect = e-157
 Identities = 278/278 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaaaattatgaactccattaagagtctttatttattataatatccttgcatggctgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 agaaaaattatgaactccattaagagtctttatttattataatatccttgcatggctgaa 419

                                                                       
Query: 61  catcctaacaggggctaggaatggcaggaggtgaaaagtgacatttagttttctggagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 catcctaacaggggctaggaatggcaggaggtgaaaagtgacatttagttttctggagga 359

                                                                       
Query: 121 agtaaaaaaatgccagataaggccacaccagaggacaccttgtgtaggaaaggctggtgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 agtaaaaaaatgccagataaggccacaccagaggacaccttgtgtaggaaaggctggtgc 299

                                                                       
Query: 181 agagccaaaccaactctgttgctcttgtgtgtatggcaattccatggagtcaccattgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 agagccaaaccaactctgttgctcttgtgtgtatggcaattccatggagtcaccattgct 239

                                                 
Query: 241 gtgagacgtaattacgcctctataaagaattctctggg 278
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gtgagacgtaattacgcctctataaagaattctctggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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