BAC Information

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BAC

Clone NameMSMg01-522D21
Chromosome1 (Build37)
Map Location 76,656,219 - 76,788,839
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039137, Tfdp1-ps, Epha4, LOC100039330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-522D21.T7 (MSMg01no522_d21.b1)MSMg01-522D21.TJ (MSMg01no522_d21.g1)
ACCAG592848AG592849
length761751
length of high quality
(start - end)		578 (52 - 629)523 (80 - 602)
definitionCHROMAT_FILE: MSMg01no522_d21.b1 PHD_FILE: MSMg01no522_d21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:48 2005CHROMAT_FILE: MSMg01no522_d21.g1 PHD_FILE: MSMg01no522_d21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,656,219 - 76,656,792)(76,788,386 - 76,788,839)
sequence
NNNNTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTGCAGTGTATTACGTTTCTCTGCACCAAAGCCAACCTGA
CAACAAAGGACTATCAGGGCTCAGAGGTTAATAGTGCCAACGGTAATCAA
GTACCCCAAAACTGGGATATTATTTTTTGAGCAACAGCATCTTGGCATTC
CTTTTCATAAAGATGTGTATTTGTGGTTATCTCCTTTCACGCATGTGTGC
TTCCACTACCAAGTAAAATACAAAGTTGACTGTCGGTTGGTTATTTTATG
CCAAAGTTTAGTTTTAAAACTTTTTCCAACTTGCCAGTACTTTTCTAGCC
ATGTTTTAACCCAGTGTTTTAAAGCTCATGGAGCTGAATGCCTCTCCCTT
CATTGCATCTTTAGACAATGAACTGATAAAGCCCAAAGTAAAATATCCAA
GTAGTTATTTTTACCATATTGAGGGTAGAATTATTAGCATTTTGAGTGCC
CAAAGTTTCCTGTGTCAAGCACAAGGCTGATATACTATAAATGATAACTA
CAGTGATGTCCTGTTATAGGAATGGGCCCTGAGAGAAGAATACACTAATC
TCCGCATTTGTGTAGTGAGACTGAGGCACAGATATGAGATATTTATTGTC
TTTCTAGGATAGCGCCTTCTCTGTCTCCTGTTTGCTAAGAAATAGATCGT
GTTTGTGCTACAGCCTTCTTTCCCAGGTATTTCTAGGAAAAGAAAAAATC
TGGCAGGATTC

NTTTTGCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCTCATTTCTTCTTAAGAT
TCTAGAAACTGCCTAAATTCATTGGCTCAAGACATCACTCCAGACTCTTG
CTTCCATGATCACATATCCCCATTCTGTATGGCCTTCTTATCTCCTTCTT
ATAAAAACCCTTGTGATTATATTGGTTGACCTGGATAGCCCAATATCAAA
AGACCCTTAACTTAATAACATCAGCAAATCCTCTTTTGCTATATTCACTG
TATTTATAGCTTAAGGGATAAAGATGCAGCTACCCTCAGGATGGGGGGAA
TTCACAGGAATTAGACTAAGTGAAAAAAAAATACTCAAAGCTTACTTACA
ATTCTACTTAGCAAAATAATTTTTTATTGATGAAATAAAAAAATACTGAA
GAGTTTAGCTGAGATATGCTAAACGGATTCCATAATTACACAAATTCAAA
GGCAATGCTAGAAAGAGACTGCAGATAGGAACATGTGCTTTCTGTAGACA
GACATGCTTCCTCAGGGAAATGGATAAGAACCTGTGCTCACTACTCTGAG
ATTTCGGAAAGAACTATTTCTCCACAAACACAGAGCACTTAATAGTATTT
AGTCTCTATAGAGAGTGTGCGAATCAAAGCTGTAAGAATTTTATGGAGAA
CTTTATGAGGTATTCTCAGCTTTGGACCTTTGCAGCTAAAAAAGGGGATG
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no522_d21.b1 MSMg01no522_d21.b1 CHROMAT_FILE:
MSMg01no522_d21.b1 PHD_FILE: MSMg01no522_d21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:48 2005
         (578 letters)



>mm_chr1_76656015_76656992
          Length = 978

 Score = 1071 bits (554), Expect = 0.0
 Identities = 569/574 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgcagtgtattacgtttctctgcaccaaagccaacctgacaacaaaggactatc 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgcagtgtattaggtttctctgcaccaaagccaacctgacaacaaaggactatc 264

                                                                       
Query: 65  agggctcagaggttaatagtgccaacggtaatcaagtaccccaaaactgggatattattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agggctcagaggttaatagtgccaacggtaatcaagtaccccaaaactgggatattattt 324

                                                                       
Query: 125 tttgagcaacagcatcttggcattccttttcataaagatgtgtatttgtggttatctcct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttgagcaacagcatcttggcattccttttcataaagatgtgtatttgtggttatctcct 384

                                                                       
Query: 185 ttcacgcatgtgtgcttccactaccaagtaaaatacaaagttgactgtcggttggttatt 244
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttcacgcatgtgtgcttccattaccaagtaaaatacaaagttgactgtcggttggttatt 444

                                                                       
Query: 245 ttatgccaaagtttagttttaaaactttttccaacttgccagtacttttctagccatgtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttatgccaaagtttagttttaaaactttttccaacttgccagtacttttctagccatgtt 504

                                                                       
Query: 305 ttaacccagtgttttaaagctcatggagctgaatgcctctcccttcattgcatctttaga 364
           |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 505 ttaacccagtgttttaaagcccatggagctgaatgcctctcccttcgttgcatctttaga 564

                                                                       
Query: 365 caatgaactgataaagcccaaagtaaaatatccaagtagttatttttaccatattgaggg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caatgaactgataaagcccaaagtaaaatatccaagtagttatttttaccatattgaggg 624

                                                                       
Query: 425 tagaattattagcattttgagtgcccaaagtttcctgtgtcaagcacaaggctgatatac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tagaattattagcattttgagtgcccaaagtttcctgtgtcaagcacaaggctgatatac 684

                                                                       
Query: 485 tataaatgataactacagtgatgtcctgttataggaatgggccctgagagaagaatacac 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tataaatgataactacagtgatgtcctgttataggaatgggccctgagagaagaatacac 744

                                             
Query: 545 taatctccgcatttgtgtagtgagactgaggcac 578
           | ||||||||||||||||||||||||||||||||
Sbjct: 745 tgatctccgcatttgtgtagtgagactgaggcac 778


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no522_d21.g1 MSMg01no522_d21.g1 CHROMAT_FILE:
MSMg01no522_d21.g1 PHD_FILE: MSMg01no522_d21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:48 2005
         (523 letters)



>mm_chr1_76787917_76788839
          Length = 923

 Score =  870 bits (450), Expect = 0.0
 Identities = 453/454 (99%)
 Strand = Plus / Minus

                                                                       
Query: 70  tgcttccatgatcacatatccccattctgtatggccttcttatctccttcttataaaaac 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 tgcttccatgatcacatatccccattctgtatggccttcttatctccttcttataaaaac 864

                                                                       
Query: 130 ccttgtgattatattggttgacctggatagcccaatatcaaaagacccttaacttaataa 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 ccttgtgattatattggttgacctggatagcccaatatcaaaagacccttaacttaataa 804

                                                                       
Query: 190 catcagcaaatcctcttttgctatattcactgtatttatagcttaagggataaagatgca 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 catcagcaaatcctcttttgctatattcactgtatttatagcttaagggataaagatgca 744

                                                                       
Query: 250 gctaccctcaggatggggggaattcacaggaattagactaagtgaaaaaaaaatactcaa 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gctaccctcaggatggggggaattcacaggaattagactaagtgaaaaaaaaatactcaa 684

                                                                       
Query: 310 agcttacttacaattctacttagcaaaataattttttattgatgaaataaaaaaatactg 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 683 agcttacttacaattctacttagcaaaataattttttattgatgaaataaaaaaacactg 624

                                                                       
Query: 370 aagagtttagctgagatatgctaaacggattccataattacacaaattcaaaggcaatgc 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aagagtttagctgagatatgctaaacggattccataattacacaaattcaaaggcaatgc 564

                                                                       
Query: 430 tagaaagagactgcagataggaacatgtgctttctgtagacagacatgcttcctcaggga 489
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tagaaagagactgcagataggaacatgtgctttctgtagacagacatgcttcctcaggga 504

                                             
Query: 490 aatggataagaacctgtgctcactactctgagat 523
           ||||||||||||||||||||||||||||||||||
Sbjct: 503 aatggataagaacctgtgctcactactctgagat 470


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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