Query= MSMg01no522_g08.b1 MSMg01no522_g08.b1 CHROMAT_FILE:
MSMg01no522_g08.b1 PHD_FILE: MSMg01no522_g08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:59 2005
(656 letters)
>mm_chr1_58540051_58541106
Length = 1056
Score = 644 bits (333), Expect = 0.0
Identities = 354/363 (97%), Gaps = 4/363 (1%)
Strand = Plus / Minus
Query: 294 ggcaggagtgaaactaaagtagctgagagctacctcctaatctgcaagtagagagggggg 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1056 ggcaggagtgaaactaaagtagctgagagctacctcctaatctgcaagtagagagggggg 997
Query: 354 ctaggcttgacatgagcttttgagcctcagagccctctttctcctacaaggccacacatc 413
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 996 ctaggcttggcatgagcttttgagcctcagagccctctttctcctacaaggccacacctc 937
Query: 414 ctaatcttgtgattaggagagttccattcactggtgactaaacattcaaatatatgcgcc 473
||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 936 ctaatcttgtg----ggagagttccattcaccggtgactaaacattcaaatatatgagcc 881
Query: 474 tatggggccattcagaccaccataaaaagagaccatatgagaattgattcatttatttat 533
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 880 tatggggccattcagaccaccataaaaagagaccatatgagaatttattcatttatttat 821
Query: 534 ttgcttatttatgtctcagcaactggaaagtgaatgcaaaagcaagggtccctatggcat 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 ttgcttatttatgtctcagcaactggaaagtgaatgcaaaagcaagggtccctatggcat 761
Query: 594 gatggcagaagccaaagcagacagaaaggatggagacaggagcctgatggtgctggggag 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 gatggcagaagccaaagcagacagaaaggatggagacaggagcctgatggtgctggggag 701
Query: 654 ctt 656
|||
Sbjct: 700 ctt 698
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_g08.g1 MSMg01no522_g08.g1 CHROMAT_FILE:
MSMg01no522_g08.g1 PHD_FILE: MSMg01no522_g08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:59 2005
(599 letters)
>mm_chr1_58451652_58452650
Length = 999
Score = 1120 bits (579), Expect = 0.0
Identities = 594/599 (99%)
Strand = Plus / Plus
Query: 1 tgcctgcttctgcatcccaagtgctgggattaaaggtgtgcactgccaccaccacccagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcctgcttctgcatcccaagtgctgggattaaaggtgtgcactgccaccaccacccagc 260
Query: 61 aacaaaaaaaagtttaaatggtattctttgaaaactggcattggccgggcatggtggcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacaaaaaaaagtttaaatggtattctttgaaaactggcattggccgggcatggtggcat 320
Query: 121 acatctttaattcttgcagttggagaggccagtaaatagaggtctagttagtgaattcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatctttaattcttgcagttggagaggccagtaaatagaggtctagttagtgaattcca 380
Query: 181 ggccagctagggctacatagggctgcttcaaaaggatgaagcacacattaacctgttgag 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 ggccagctagggctacatagggctgcttcaaaaagatgaagcacacattaacctgttgag 440
Query: 241 tagttttgaggaaatggagaatgggctaactactggttttaaggttgtttctggttttct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagttttgaggaaatggagaatgggctaactactggttttaaggttgtttctggttttct 500
Query: 301 acctttcatagaaagtttgacacatatgacagcatctttgtatattctccatagtctgtc 360
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 acctttcatagaaagtttgacacagatgacagcatctttgtatattctccatagtctgtc 560
Query: 361 ccccggttgtgtattccagcctttggtaggtatagttttagccaatagattttcttaaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccccggttgtgtattccagcctttggtaggtatagttttagccaatagattttcttaaac 620
Query: 421 taaagcagtttatcaataatgaaggaaattggggctggagagatggctcagccagttaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taaagcagtttatcaataatgaaggaaattggggctggagagatggctcagccagttaag 680
Query: 481 agcactgactgttcttccaggtgttctgagttcaaatcccagcaatcacatggtgtctta 540
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 681 ggcactgactgttcttccaggtgttctgagttcaaatcccagtaatcacatggtgactta 740
Query: 541 caaccgtccatgagatctgacgccccctcctggtgtatctcaagtcagctacagtgtac 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caaccgtccatgagatctgacgccccctcctggtgtatctcaagtcagctacagtgtac 799
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space: 582521
Effective search space used: 582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
